| .preparePredict | Internal function to prepare data for prediction | 
| BioDB | Biomarker Thresholds Database | 
| CompositeData | An constructor function for the S4 CompositeData class | 
| CompositeData-class | A S4 class to represent data for creating a composite | 
| CompositeReady | An constructor function for the S4 CompositeReady class | 
| CompositeReady-class | An S4 class to represent composite ready data | 
| dropData | Drop unnecessary data from a MahalanobisComposite object. | 
| factorComposite | Score Data Using a Factor Model | 
| FactorScores-class | An S4 class to represent composite scores based on Mahalanobis distance | 
| ldensity | Density Plot for a Long Dataset | 
| mahalanobisComposite | Score Data Using the Mahalanobis Distance | 
| MahalanobisScores-class | An S4 class to represent composite scores based on Mahalanobis distance | 
| MetSSS | Score the MetSSS | 
| MetSSS_model | MetSSS Model | 
| predictCS | Internal function to prepare data for prediction | 
| prepareComposite | Prepare distance scores on data in preparation for composite scoring | 
| sumComposite | Score Data Using a simple sum | 
| SumScores-class | An S4 class to represent composite scores based on Mahalanobis distance |