AlphaRep                Alpha repeatability
BayesianCalculateMatrix
                        Calculate Covariance Matrix from a linear model
                        fitted with lm() using different estimators
BootstrapR2             R2 confidence intervals by bootstrap resampling
BootstrapRep            Bootstrap analysis via resampling
BootstrapStat           Non-Parametric population samples and statistic
                        comparison
CalcAVG                 Calculates mean correlations within- and
                        between-modules
CalcEigenVar            Integration measure based on eigenvalue
                        dispersion
CalcICV                 Calculates the ICV of a covariance matrix.
CalcR2                  Mean Squared Correlations
CalcR2CvCorrected       Corrected integration value
CalcRepeatability       Parametric per trait repeatabilities
CalculateMatrix         Calculate Covariance Matrix from a linear model
                        fitted with lm()
Center2MeanJacobianFast
                        Centered jacobian residuals
ComparisonMap           Generic Comparison Map functions for creating
                        parallel list methods Internal functions for
                        making eficient comparisons.
CreateHypotMatrix       Creates binary correlation matrices
DeltaZCorr              Compare matrices via the correlation between
                        response vectors
DriftTest               Test drift hypothesis
EigenTensorDecomposition
                        Eigentensor Decomposition
ExtendMatrix            Control Inverse matrix noise with Extension
JacobianArray           Local Jacobian calculation
KrzCor                  Compare matrices via Krzanowski Correlation
KrzProjection           Compare matrices via Modified Krzanowski
                        Correlation
KrzSubspace             Krzanowski common subspaces analysis
KrzSubspaceBootstrap    Quasi-Bayesian Krzanowski subspace comparison
KrzSubspaceDataFrame    Extract confidence intervals from
                        KrzSubspaceBootstrap
LModularity             L Modularity
LocalShapeVariables     Local Shape Variables
MINT                    Modularity and integration analysis tool
MantelCor               Compare matrices via Mantel Correlation
MantelModTest           Test single modularity hypothesis using Mantel
                        correlation
MatrixCompare           Matrix Compare
MatrixDistance          Matrix distance
MeanMatrix              Mean Covariance Matrix
MeanMatrixStatistics    Calculate mean values for various matrix
                        statistics
MonteCarloR2            R2 confidence intervals by parametric sampling
MonteCarloRep           Parametric repeatabilities with covariance or
                        correlation matrices
MonteCarloStat          Parametric population samples with covariance
                        or correlation matrices
MultiMahalanobis        Calculate Mahalonabis distance for many vectors
MultivDriftTest         Multivariate genetic drift test for 2
                        populations
Normalize               Normalize and Norm
OverlapDist             Distribution overlap distance
PCAsimilarity           Compare matrices using PCA similarity factor
PCScoreCorrelation      PC Score Correlation Test
Partition2HypotMatrix   Create binary hypothesis
PhyloCompare            Compares sister groups
PhyloMantel             Mantel test with phylogenetic permutations
PhyloW                  Calculates ancestral states of some statistic
PlotKrzSubspace         Plot KrzSubspace boostrap comparison
PlotRarefaction         Plot Rarefaction analysis
PlotTreeDriftTest       Plot results from TreeDriftTest
PrintMatrix             Print Matrix to file
ProjectMatrix           Project Covariance Matrix
RSProjection            Random Skewers projection
RandCorr                Random correlation matrix
RandomMatrix            Random matrices for tests
RandomSkewers           Compare matrices via RandomSkewers
Rarefaction             Rarefaction analysis via resampling
RarefactionStat         Non-Parametric rarefacted population samples
                        and statistic comparison
RelativeEigenanalysis   Relative Eigenanalysis
RemoveSize              Remove Size Variation
RevertMatrix            Revert Matrix
RiemannDist             Matrix Riemann distance
Rotate2MidlineMatrix    Midline rotate
SRD                     Compare matrices via Selection Response
                        Decomposition
SingleComparisonMap     Generic Single Comparison Map functions for
                        creating parallel list methods Internal
                        functions for making efficient comparisons.
TPS                     TPS transform
TestModularity          Test modularity hypothesis
TreeDriftTest           Drift test along phylogeny
dentus                  Example multivariate data set
dentus.tree             Tree for dentus example species
evolqg                  EvolQG
ratones                 Linear distances for five mouse lines
