Bayesian Tree Ensembles for Survival Analysis and Causal Inference

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Documentation for package ‘ShrinkageTrees’ version 2.0.2

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Code demos. Use demo() to run them.
• Package NEWS
• Package README

Help Pages

as.mcmc.list.ShrinkageTrees	Convert MCMC output to a coda mcmc.list
bayesian_bootstrap_ate	Bayesian bootstrap average treatment effect
CausalHorseForest	Causal Horseshoe Forests
CausalShrinkageForest	General Causal Shrinkage Forests
HorseTrees	Horseshoe Regression Trees (HorseTrees)
ovarian	Semi-synthesised TCGA Ovarian Cancer Dataset
ovarian_truth	Ground-truth quantities for the semi-synthesised ovarian dataset
pdac	Processed TCGA PAAD dataset (pdac)
plot.CausalShrinkageForest	Plot diagnostics for a CausalShrinkageForest model
plot.ShrinkageTrees	Plot diagnostics for a ShrinkageTrees model
plot.ShrinkageTreesPrediction	Plot posterior predictive survival curves
predict.CausalShrinkageForest	Posterior predictive inference for a CausalShrinkageForest model
predict.ShrinkageTrees	Posterior predictive inference for a ShrinkageTrees model
print.CausalShrinkageForest	Print a CausalShrinkageForest model
print.CausalShrinkageForestPrediction	Print a CausalShrinkageForestPrediction object
print.ShrinkageTrees	Print a ShrinkageTrees model
print.ShrinkageTreesPrediction	Print a ShrinkageTreesPrediction object
print.summary.CausalShrinkageForest	Print a CausalShrinkageForest model summary
print.summary.CausalShrinkageForestPrediction	Print a CausalShrinkageForestPrediction summary
print.summary.ShrinkageTrees	Print a ShrinkageTrees model summary
print.summary.ShrinkageTreesPrediction	Print a ShrinkageTreesPrediction summary
ShrinkageTrees	General Shrinkage Regression Trees (ShrinkageTrees)
summary.CausalShrinkageForest	Summarise a CausalShrinkageForest model
summary.CausalShrinkageForestPrediction	Summarise a CausalShrinkageForestPrediction object
summary.ShrinkageTrees	Summarise a ShrinkageTrees model
summary.ShrinkageTreesPrediction	Summarise a ShrinkageTreesPrediction object
SurvivalBART	SurvivalBART
SurvivalBCF	SurvivalBCF (Bayesian Causal Forest for survival data)
SurvivalDART	SurvivalDART
SurvivalShrinkageBCF	SurvivalShrinkageBCF (Shrinkage Bayesian Causal Forest for survival data)