* using log directory 'd:/Rcompile/CRANpkg/local/4.4/eyeris.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'eyeris/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'eyeris' version '3.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'eyeris' can be installed ... OK * checking installed package size ... NOTE installed size is 5.8Mb sub-directories of 1Mb or more: doc 2.8Mb help 1.1Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking whether startup messages can be suppressed ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s] OK * checking Rd files ... [3s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [48s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [121s] ERROR Running 'testthat.R' [120s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(eyeris) eyeris v3.0.0 - Lumpy Space Princess ꒰•ᴗ•。꒱۶ Welcome! Type ?`eyeris` to get started. > > test_check("eyeris") i [2025-09-26 09:23:39] [INFO] Created output directory: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_chunked_output v [2025-09-26 09:23:39] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/bids_test/derivatives/test-db.eyerisdb i [2025-09-26 09:23:39] [INFO] Exporting data types: confounds_summary i [2025-09-26 09:23:39] [INFO] Processing data type: confounds_summary i [2025-09-26 09:23:39] [INFO] Grouping tables by epoch label... i [2025-09-26 09:23:39] [INFO] Found 1 epoch label groups for confounds_summary: _nolabel i [2025-09-26 09:23:39] [INFO] Analyzing column structures within epoch group '_nolabel'... i [2025-09-26 09:23:39] [INFO] Found 2 column-compatible groups within '_nolabel': goal, stim i [2025-09-26 09:23:39] [INFO] Processing confounds_summary group 'goal' (2 tables) i [2025-09-26 09:23:39] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2025-09-26 09:23:39] [INFO] Processing with file size chunking enabled i [2025-09-26 09:23:39] [INFO] Starting chunked query processing (chunk size: 50) i [2025-09-26 09:23:39] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_goal" UNION ALL SELECT * FROM "confounds_summary_02_task_run01_goal" i [2025-09-26 09:23:39] [INFO] Processing chunk 1: 50 rows i [2025-09-26 09:23:39] [INFO] Created output file: test-db_confounds_summary_goal_chunked_01.csv i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 50 rows i [2025-09-26 09:23:40] [INFO] Processing chunk 3: 50 rows i [2025-09-26 09:23:40] [INFO] No more data to process v [2025-09-26 09:23:40] [OKAY] Chunked processing complete: i [2025-09-26 09:23:40] [INFO] Total rows: 150 i [2025-09-26 09:23:40] [INFO] Chunks: 3 i [2025-09-26 09:23:40] [INFO] Processing time: 0 seconds i [2025-09-26 09:23:40] [INFO] Average rate: 4009 rows/second i [2025-09-26 09:23:40] [INFO] Processing confounds_summary group 'stim' (1 tables) i [2025-09-26 09:23:40] [INFO] Using chunked processing (file size limit = 50MB < 500MB threshold) i [2025-09-26 09:23:40] [INFO] Processing with file size chunking enabled i [2025-09-26 09:23:40] [INFO] Starting chunked query processing (chunk size: 50) i [2025-09-26 09:23:40] [INFO] Query: SELECT * FROM "confounds_summary_01_task_run01_stim" i [2025-09-26 09:23:40] [INFO] Processing chunk 1: 50 rows i [2025-09-26 09:23:40] [INFO] Created output file: test-db_confounds_summary_stim_chunked_01.csv i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 50 rows i [2025-09-26 09:23:40] [INFO] No more data to process v [2025-09-26 09:23:40] [OKAY] Chunked processing complete: i [2025-09-26 09:23:40] [INFO] Total rows: 100 i [2025-09-26 09:23:40] [INFO] Chunks: 2 i [2025-09-26 09:23:40] [INFO] Processing time: 0 seconds i [2025-09-26 09:23:40] [INFO] Average rate: 3202 rows/second v [2025-09-26 09:23:40] [OKAY] Export complete! i [2025-09-26 09:23:40] [INFO] Data types exported: 2 i [2025-09-26 09:23:40] [INFO] Total rows exported: 250 i [2025-09-26 09:23:40] [INFO] Output directory: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_chunked_output i [2025-09-26 09:23:40] [INFO] Disconnected from eyeris database i [2025-09-26 09:23:40] [INFO] Created output directory: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/size_test_output v [2025-09-26 09:23:40] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/bids_size_test/derivatives/size-test.eyerisdb i [2025-09-26 09:23:40] [INFO] Exporting data types: timeseries i [2025-09-26 09:23:40] [INFO] Processing data type: timeseries i [2025-09-26 09:23:40] [INFO] Processing timeseries group 'all' (1 tables) i [2025-09-26 09:23:40] [INFO] Using chunked processing (file size limit = 0.05MB < 500MB threshold) i [2025-09-26 09:23:40] [INFO] Processing with file size chunking enabled i [2025-09-26 09:23:40] [INFO] Starting chunked query processing (chunk size: 500) i [2025-09-26 09:23:40] [INFO] Query: SELECT * FROM "timeseries_01_test_run01" i [2025-09-26 09:23:40] [INFO] Processing chunk 1: 500 rows i [2025-09-26 09:23:40] [INFO] Created output file: size-test_timeseries_chunked_01.csv i [2025-09-26 09:23:40] [INFO] Processing chunk 2: 500 rows i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_02.csv i [2025-09-26 09:23:40] [INFO] Created output file: size-test_timeseries_chunked_02.csv i [2025-09-26 09:23:40] [INFO] Processing chunk 3: 500 rows i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_03.csv i [2025-09-26 09:23:40] [INFO] Created output file: size-test_timeseries_chunked_03.csv i [2025-09-26 09:23:40] [INFO] Processing chunk 4: 500 rows i [2025-09-26 09:23:40] [INFO] Starting new file due to size limit: size-test_timeseries_chunked_04.csv i [2025-09-26 09:23:40] [INFO] Created output file: size-test_timeseries_chunked_04.csv i [2025-09-26 09:23:40] [INFO] No more data to process v [2025-09-26 09:23:40] [OKAY] Chunked processing complete: i [2025-09-26 09:23:40] [INFO] Total rows: 2000 i [2025-09-26 09:23:40] [INFO] Chunks: 4 i [2025-09-26 09:23:40] [INFO] Processing time: 0.2 seconds i [2025-09-26 09:23:40] [INFO] Average rate: 12666 rows/second i [2025-09-26 09:23:40] [INFO] Finalizing 4 output files with proper numbering... i [2025-09-26 09:23:40] [INFO] Renamed: size-test_timeseries_chunked_01.csv -> size-test_timeseries_chunked_01-of-04.csv i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_02.csv -> size-test_timeseries_chunked_02-of-04.csv i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_03.csv -> size-test_timeseries_chunked_03-of-04.csv i [2025-09-26 09:23:41] [INFO] Renamed: size-test_timeseries_chunked_04.csv -> size-test_timeseries_chunked_04-of-04.csv v [2025-09-26 09:23:41] [OKAY] Export complete! i [2025-09-26 09:23:41] [INFO] Data types exported: 1 i [2025-09-26 09:23:41] [INFO] Total rows exported: 2000 i [2025-09-26 09:23:41] [INFO] Output directory: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/size_test_output i [2025-09-26 09:23:41] [INFO] Disconnected from eyeris database v [2025-09-26 09:23:42] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids/derivatives/user-test.eyerisdb i [2025-09-26 09:23:42] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' i [2025-09-26 09:23:42] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epochs_002_02_memory_run01") as combined_data WHERE 1=1 AND subject_id = '002' AND session_id = '02' AND task_name = 'memory' i [2025-09-26 09:23:42] [INFO] Disconnected from eyeris database i [2025-09-26 09:23:45] [INFO] Executing query: SELECT * FROM (SELECT * FROM "epoch_timeseries_005_01_epochtest_run01_prepostprobe") as combined_data WHERE 1=1 AND subject_id = '005' v [2025-09-26 09:23:46] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:23:46] [INFO] Processing block: block_1 v [2025-09-26 09:23:46] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:23:46] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:23:47] [OKAY] Running eyeris::interpolate() for block_1 v [2025-09-26 09:23:47] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:23:47] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:23:47] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:23:47] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:23:47] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:23:47] [INFO] Block processing summary: i [2025-09-26 09:23:47] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:23:47] [OKAY] Running eyeris::summarize_confounds() i [2025-09-26 09:23:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:55] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:56] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:57] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:58] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:58] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:23:59] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:00] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:01] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:02] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-09-26 09:24:10] [WARN] No detrend data found for run-01 processing file: sub-001.Rmd output file: sub-001.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-001.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-001.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313282ece5415.html" File not found in resource path v [2025-09-26 09:24:12] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:24:12] [INFO] Processing block: block_1 v [2025-09-26 09:24:12] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:24:12] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:24:12] [OKAY] Running eyeris::interpolate() for block_1 v [2025-09-26 09:24:13] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:24:13] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:24:13] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:24:13] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:24:13] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:24:13] [INFO] Block processing summary: i [2025-09-26 09:24:13] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:24:13] [OKAY] Running eyeris::summarize_confounds() i [2025-09-26 09:24:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:19] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:20] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:21] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:22] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:23] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:24] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:25] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:26] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:27] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:28] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:29] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:30] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-09-26 09:24:35] [WARN] No detrend data found for run-01 processing file: sub-002.Rmd output file: sub-002.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-002.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-002.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313287826548b.html" File not found in resource path v [2025-09-26 09:24:36] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:24:36] [INFO] Processing block: block_1 v [2025-09-26 09:24:36] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:24:36] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:24:36] [OKAY] Running eyeris::interpolate() for block_1 v [2025-09-26 09:24:36] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:24:36] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:24:36] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:24:36] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:24:36] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:24:36] [INFO] Block processing summary: i [2025-09-26 09:24:36] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:24:36] [OKAY] Running eyeris::summarize_confounds() i [2025-09-26 09:24:38] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:39] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:40] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:41] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:42] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:43] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:45] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:47] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:48] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:49] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:50] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:51] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:52] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:53] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:24:54] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-09-26 09:24:59] [WARN] No detrend data found for run-01 processing file: sub-003.Rmd output file: sub-003.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-003.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-003.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313281e6f8cd.html" File not found in resource path v [2025-09-26 09:25:00] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:25:00] [INFO] Processing block: block_1 v [2025-09-26 09:25:00] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:25:00] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:25:00] [OKAY] Running eyeris::interpolate() for block_1 v [2025-09-26 09:25:00] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:25:00] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:25:00] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:25:00] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:25:00] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:25:00] [INFO] Block processing summary: i [2025-09-26 09:25:00] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:25:00] [OKAY] Running eyeris::summarize_confounds() i [2025-09-26 09:25:03] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:04] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:05] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:06] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:07] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:08] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:09] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:10] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:11] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:12] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:13] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:14] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:15] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:16] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:17] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 i [2025-09-26 09:25:18] [INFO] Plotting block 1 with sampling rate 1000 Hz from possible blocks: 1 ! [2025-09-26 09:25:23] [WARN] No detrend data found for run-01 processing file: sub-004.Rmd output file: sub-004.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS sub-004.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output sub-004.html --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --section-divs --table-of-contents --toc-depth 6 --variable toc_float=1 --variable toc_selectors=h1,h2,h3,h4,h5,h6 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "D:\RCompile\CRANpkg\lib\4.4\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --css "D:/RCompile/CRANpkg/lib/4.4/eyeris/rmarkdown/css/report.css" --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt\rmarkdown-str313287452166e.html" File not found in resource path i [2025-09-26 09:25:25] [INFO] Disconnected from eyeris database v [2025-09-26 09:25:26] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids/derivatives/test-study.eyerisdb i [2025-09-26 09:25:26] [INFO] Disconnected from eyeris database i [2025-09-26 09:25:26] [INFO] Disconnected from eyeris database v [2025-09-26 09:25:27] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_read/derivatives/read-test.eyerisdb i [2025-09-26 09:25:27] [INFO] Disconnected from eyeris database i [2025-09-26 09:25:27] [INFO] Disconnected from eyeris database v [2025-09-26 09:25:27] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_size/derivatives/size-test.eyerisdb i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database v [2025-09-26 09:25:28] [OKAY] Connected to eyeris database: D:\temp\2025_09_26_01_50_00_4539\Rtmp8qlOOt/test_bids_empty/derivatives/empty-test.eyerisdb ! [2025-09-26 09:25:28] [WARN] No valid tables found in database (after excluding temp tables) i [2025-09-26 09:25:28] [INFO] Disconnected from eyeris database v [2025-09-26 09:25:28] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:25:29] [INFO] Processing block: block_1 v [2025-09-26 09:25:29] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:25:29] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:25:29] [OKAY] Running eyeris::interpolate() for block_1 v [2025-09-26 09:25:29] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:25:29] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:25:29] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:25:29] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:25:29] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:25:29] [INFO] Block processing summary: i [2025-09-26 09:25:29] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:25:29] [OKAY] Running eyeris::summarize_confounds() v [2025-09-26 09:25:29] [OKAY] Running eyeris::load_asc() i [2025-09-26 09:25:30] [INFO] Binocular data detected. Processing average mode. i [2025-09-26 09:25:30] [INFO] Processing block: block_1 v [2025-09-26 09:25:30] [OKAY] Running eyeris::deblink() for block_1 v [2025-09-26 09:25:30] [OKAY] Running eyeris::detransient() for block_1 v [2025-09-26 09:25:30] [OKAY] Running eyeris::interpolate() for block_1 ! [2025-09-26 09:25:30] [WARN] No NAs detected in pupil data... Skipping interpolation! v [2025-09-26 09:25:30] [OKAY] Running eyeris::lpfilt() for block_1 ! [2025-09-26 09:25:30] [WARN] Skipping eyeris::downsample() for block_1 ! [2025-09-26 09:25:30] [WARN] Skipping eyeris::bin() for block_1 ! [2025-09-26 09:25:30] [WARN] Skipping eyeris::detrend() for block_1 v [2025-09-26 09:25:30] [OKAY] Running eyeris::zscore() for block_1 i [2025-09-26 09:25:30] [INFO] Block processing summary: i [2025-09-26 09:25:30] [INFO] block_1: OK (steps: 6, latest: pupil_raw_deblink_detransient_interpolate_lpfilt_z) v [2025-09-26 09:25:30] [OKAY] Running eyeris::summarize_confounds() [ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-parallel-database.R:10:7'): manual parallel processing flag enables temporary databases ── Expected `{ ... }` to run without any errors. i Actually got a with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:4:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:9:5 ── Failure ('test-parallel-database.R:32:7'): SLURM environment variables are detected for parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5 ── Failure ('test-parallel-database.R:52:7'): PBS environment variables are detected for parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a with text: pandoc document conversion failed with error 99 Backtrace: ▆ 1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3 2. │ └─base::force(code) 3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5 ── Failure ('test-parallel-database.R:71:5'): normal database operation works without parallel processing ── Expected `{ ... }` to run without any errors. i Actually got a with text: pandoc document conversion failed with error 99 [ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [35s] OK * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... [25s] OK * DONE Status: 1 ERROR, 1 NOTE