* using log directory 'd:/Rcompile/CRANpkg/local/4.4/bssm.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bssm/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bssm' version '2.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bssm' can be installed ... WARNING Found the following significant warnings: R_approx.cpp:71:22: warning: 'bool arma::is_finite(const Base&) [with T1 = Mat; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] R_psi.cpp:201:22: warning: 'bool arma::is_finite(const Base&) [with T1 = Mat; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] approx_mcmc.cpp:120:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] approx_mcmc.cpp:236:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] approx_mcmc.cpp:276:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] approx_mcmc.cpp:1530:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] mcmc.cpp:353:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] mcmc.cpp:545:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] mcmc.cpp:701:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] mcmc.cpp:848:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_mng.cpp:224:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_mng.cpp:364:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_mng.cpp:415:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_nlg.cpp:69:25: warning: 'bool arma::is_finite(const Base&) [with T1 = Mat; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] model_ssm_nlg.cpp:115:27: warning: 'bool arma::is_finite(const Base&) [with T1 = Mat; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] model_ssm_nlg.cpp:115:66: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_nlg.cpp:134:31: warning: 'bool arma::is_finite(const Base&) [with T1 = Mat; typename T1::elem_type = double]' is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] model_ssm_nlg.cpp:134:66: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_sde.cpp:34:21: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_sde.cpp:64:41: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:125:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:174:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:202:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:230:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:270:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:286:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:293:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:331:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:343:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:349:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:379:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:397:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:404:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:435:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:457:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:492:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:527:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:544:24: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:575:21: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ulg.cpp:619:41: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:248:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:257:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:266:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:275:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:285:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:391:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:452:22: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:549:21: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:589:41: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:633:21: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] model_ssm_ung.cpp:672:41: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only::result*) [with eT = double; typename arma_scalar_only::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] See 'd:/Rcompile/CRANpkg/local/4.4/bssm.Rcheck/00install.out' for details. * used C++ compiler: 'g++.exe (GCC) 13.3.0' * checking installed package size ... NOTE installed size is 7.7Mb sub-directories of 1Mb or more: data 1.1Mb doc 2.8Mb libs 3.2Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [54s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [47s] OK Running 'test_all.R' [47s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [258s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [11s] OK * DONE Status: 1 WARNING, 1 NOTE