AccSGD                  AccSGD
AdaBound                AdaBound
Adamax                  Adamax
DNN                     Non-linear model (deep neural network) of
                        environmental responses
DiffGrad                DiffGrad
RMSprop                 RMSprop
Rsquared                R-squared
SGD                     SGD
anova.sjSDM             Anova
bioticStruct            biotic structure
checkModel              check model check model and rebuild if
                        necessary
check_module            check module
coef.sjSDM              Return coefficients from a fitted sjSDM model
generateSpatialEV       Generate spatial eigenvectors
getCor                  getCor
getCov                  getCov
getImportance           getImportance
getSe                   Post hoc calculation of standard errors
getWeights              Get weights
importance              importance
install_diagnostic      install diagnostic
install_sjSDM           Install sjSDM and its dependencies
installation_help       Installation help
is_torch_available      is_torch_available
linear                  Linear model of environmental response
logLik.sjSDM            Extract negative-log-Likelihood from a fitted
                        sjSDM model
madgrad                 madgrad
new_image               new_image function
plot.sjSDM              Coefficients plot
plot.sjSDM.DNN          Training history
plot.sjSDM_cv           Plot elastic net tuning
plot.sjSDManova         Plot anova results
plot.sjSDMimportance    Plot importance
plotInternalStructure   Plot internal metacommunity structure
plotsjSDMcoef           Internal coefficients plot
predict.sjSDM           Predict from a fitted sjSDM model
print.DNN               Print a DNN object
print.bioticStruct      Print a bioticStruct object
print.linear            Print a linear object
print.sjSDM             Print a fitted sjSDM model
print.sjSDM_cv          Print a fitted sjSDM_cv model
print.sjSDManova        Print sjSDM anova
print.sjSDMimportance   Print importance
setWeights              Set weights
simulate.sjSDM          Generates simulations from sjSDM model
simulate_SDM            Simulate joint Species Distribution Models
sjSDM                   Fitting scalable joint Species Distribution
                        Models (sjSDM)
sjSDMControl            sjSDM control object
sjSDM_cv                Cross validation of elastic net tuning
summary.sjSDM           Return summary of a fitted sjSDM model
summary.sjSDM_cv        Return summary of a fitted sjSDM_cv model
update.sjSDM            Update and re-fit a model call
