PlotDistro              Plot a value relative to a background
                        distribution from a palmprint data.frame.
PlotGeo                 A multi-plot wrapper to convert a list of SRA
                        'run_ids' into a geographic world-map and
                        timeline.
PlotGeo2                Create a rich plotly geo map from a palm.sra
                        data.frame
PlotGeoReport           A multi-plot wrapper to convert a list of SRA
                        'run_ids' into a geographic world-map and
                        timeline.
PlotID                  Plot Percent-identity vs. E-value of a pro file
PlotLengths             A wrapper for PlotDistro() for "pp_length",
                        "v1_length", "v2_length".
PlotOrgn                Plot a wordcloud of the organisms in a palm.sra
                        object or orgn.vec
PlotPP                  Plot the palmprint-diagram for a palmscan df
                        object
PlotProReport           Create PlotID and PlotTax grid-plot
PlotReport              A wrapper for palmid Plot* functions to create
                        a standard "report"
PlotTax                 Plot a taxonomic-classifier based histogram
PlotTaxHist             Plot Percent-identity, factored on taxonomic
                        strings of a pro df
PlotTaxReport           A multi-plot wrapper to convert a list of SRA
                        'run_ids' into a geographic world-map and
                        timeline.
PlotTimeline            PlotTimeline Create a timeline of
SerratusConnect         SerratusConnect
fev2df                  Convert a palmscan Field-Equals-Value (FEV)
                        column into a dataframe
geoFilter               Conversion between run_ids and geo objects
                        often contain NA/NULL values This removes
                        NA-containing rows
geoFilter2              Conversion between run_ids and geo objects
                        often contain NA/NULL values This removes
                        NA-containing rows
get.palmSra             A wrapper of several get* functions to create a
                        palm.sra data.frame
get.proTax              A wrapper for get.tax() specific for 'pro.df'
                        input and returns a populated the "tspe",
                        "tfam", and "tphy" columns of 'pro.df' based on
                        the "sseqid" column
get.sOTU                get.sOTU
get.sra                 get.sra
get.sraBio              get.sraBio
get.sraDate             get.sraDate
get.sraGeo              get.sraGeo
get.sraOrgn             get.sraOrgn
get.tax                 get.tax
identityWordcount       identityWordcount
linkBLAST               Parse an input sequence into a BLAST-able HTML
                        link
make_bg_data            Read a multiple-FEV file to create a background
                        set of palmprints Standard approach is to use
                        palmDB
normalizeWordcount      normalizeWordCount Create frequency-count table
                        from a set of characters which are normalized
                        as percentage of total corpus
palmdb                  palmdb
read.fev                Reads a .fev file created by 'palmscan'
read.pro                Reads a .pro file created by 'diamond'
standardizeWordcount    standardizeWordcount Create frequency-count
                        table from a set of characters which are
                        assigned a standardized rank-order scores from
                        10.0 to 1.0.
waxsys.palm.sra         waxsys.palm.sra
waxsys.palmprint        waxsys.palmprint
waxsys.pro.df           waxsys.pro.df
