Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/lcmsPlot

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

[top]

Package: lcmsPlot

Version: 0.99.2

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lcmsPlot

BuildTime: 1 minutes 17.93 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: lcmsPlot_20251006112107

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: lcmsPlot. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file lcmsPlot/DESCRIPTION ... OK
* preparing lcmsPlot:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building creating_publication_ready_plots.Rmd using rmarkdown
--- finished re-building creating_publication_ready_plots.Rmd

--- re-building lcms_data_plotting.Rmd using rmarkdown

Quitting from lcms_data_plotting.Rmd:223-225 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'param' in selecting a method for function 'adjustRtime': could not find function "ObiwarpParam"
---
Backtrace:
    
 1. xcms::adjustRtime(faahko, param = ObiwarpParam(binSize = 0.6))
 2. base::.handleSimpleError(...)
 3.   base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lcms_data_plotting.Rmd' failed with diagnostics:
error in evaluating the argument 'param' in selecting a method for function 'adjustRtime': could not find function "ObiwarpParam"
--- failed re-building lcms_data_plotting.Rmd

SUMMARY: processing the following file failed:
  lcms_data_plotting.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

[top]

nebbiolo2 BUILD BIN output

[top]