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URL: https://git.bioconductor.org/packages/betterChromVAR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: betterChromVAR

Version: 0.99.17

RVersion: 4.6

BiocVersion: 3.23

BuildCommand: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data betterChromVAR

BuildTime: 0 minutes 30.30 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: betterChromVAR_20260331091227

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: betterChromVAR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file betterChromVAR/DESCRIPTION ... OK
* preparing betterChromVAR:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building betterChromVAR.Rmd using rmarkdown

Quitting from betterChromVAR.Rmd:90-93 [betterChromVAR]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getBackgroundBins()`:
! object 'idx' not found
---
Backtrace:
    
 1. betterChromVAR::betterChromVAR(counts, motifMatches)
 2.   betterChromVAR::getBackgroundBins(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'betterChromVAR.Rmd' failed with diagnostics:
object 'idx' not found
--- failed re-building betterChromVAR.Rmd

SUMMARY: processing the following file failed:
  betterChromVAR.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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