Package: HumanRetinaLRSData
Type: Package
Title: Long-read RNA-seq gene count data from human retinal organoids
Version: 0.99.5
Authors@R: c(
    person("Sowmya", "Parthiban", email = "sparthi1@jhu.edu", role = c("aut", "cre")))
Description: Dataset package containing gene and isoform count matrices,
    and sample metadata for long-read direct cDNA sequencing of human retinal
    organoids, 2D retinal ganglion cell (RGC) cultures, and flowthrough
    fractions from H9 and EP1 iPSC cell lines. Data were generated using
    Oxford Nanopore Technology (ONT) direct cDNA sequencing and mapped to
    the GRCh38 reference genome (GENCODE v46 annotation). The package provides
    accessor functions returning SummarizedExperiment objects for gene-level
    counts, isoform-level counts, and a matrix of allele-specific expression
    (ASE) gene counts. Data files are stored in flat CSV format in an Open
    Science Framework (OSF) repository and cached locally via BiocFileCache.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/sparthib/HumanRetinaLrsData
BugReports: https://github.com/sparthib/HumanRetinaLrsData/issues
biocViews: ExperimentData, RNASeqData, ExpressionData,
        Homo_sapiens_Data, CellCulture
RoxygenNote: 7.3.2
Depends: R (>= 4.6.0), SummarizedExperiment
Imports: osfr, BiocFileCache
Suggests: testthat, knitr, rmarkdown, ggplot2, ggrepel
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/HumanRetinaLRSData
git_branch: devel
git_last_commit: e3942cd
git_last_commit_date: 2026-03-31
Repository: Bioconductor 3.23
Date/Publication: 2026-04-16
NeedsCompilation: no
Packaged: 2026-04-16 15:25:55 UTC; biocbuild
Author: Sowmya Parthiban [aut, cre]
Maintainer: Sowmya Parthiban <sparthi1@jhu.edu>
