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SpatialDatasets

This is the released version of SpatialDatasets; for the devel version, see SpatialDatasets.

Collection of spatial omics datasets


Bioconductor version: Release (3.21)

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Shreya Rao [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]

Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>

Citation (from within R, enter citation("SpatialDatasets")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpatialDatasets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpatialDatasets")
The SpatialDataset package HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version 1.6.3
License GPL-3
Depends ExperimentHub, SpatialExperiment
Imports utils
System Requirements
URL https://github.com/SydneyBioX/SpatialDatasets
Bug Reports https://github.com/SydneyBioX/SpatialDatasets/issues
See More
Suggests BiocStyle, knitr, rmarkdown, cytomapper
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me lisaClust, spicyR, spicyWorkflow
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SpatialDatasets_1.6.3.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SpatialDatasets
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SpatialDatasets
Package Short Url https://bioconductor.org/packages/SpatialDatasets/
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