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MouseThymusAgeing

This is the released version of MouseThymusAgeing; for the devel version, see MouseThymusAgeing.

Single-cell Transcriptomics Data of the Ageing Mouse Thymus


Bioconductor version: Release (3.21)

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

Maintainer: Mike Morgan <michael.morgan at abdn.ac.uk>

Citation (from within R, enter citation("MouseThymusAgeing")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseThymusAgeing")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseThymusAgeing")
Available datasets HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, SingleCellData
Version 1.16.0
License GPL-3
Depends SingleCellExperiment, SummarizedExperiment
Imports ExperimentHub, methods, BiocGenerics, S4Vectors
System Requirements
URL
Bug Reports https://github.com/MarioniLab/MouseThymusAgeing/issues
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Suggests knitr, scuttle, rmarkdown, BiocStyle
Linking To
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Depends On Me
Imports Me
Suggests Me miloR
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseThymusAgeing_1.16.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MouseThymusAgeing
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseThymusAgeing
Package Short Url https://bioconductor.org/packages/MouseThymusAgeing/
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