# Generated by roxygen2: do not edit by hand

export("calibration<-")
export("imp<-")
export(align_datasets)
export(apply_calibration)
export(calibrate_oof)
export(calibration)
export(factor_dependence)
export(id_map)
export(imp)
export(oof)
export(params)
export(plot_confusion_heatmap)
export(plot_embed)
export(plot_embed_expr)
export(plot_importance)
export(plot_roc)
export(plot_roc_multi)
export(plot_shap_dependence)
export(plot_sign_importance)
export(prepare_data)
export(rank_genes)
export(rfgr_crossval)
export(rfgr_plot_suite)
export(shap_train_ranger)
export(sign_importance)
export(top_genes)
export(validate_genes)
exportMethods("calibration<-")
exportMethods("imp<-")
exportMethods(calibration)
exportMethods(imp)
exportMethods(oof)
exportMethods(params)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,SimpleList)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_equal)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_step)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(methods,new)
importFrom(pROC,auc)
importFrom(pROC,coords)
importFrom(pROC,roc)
importFrom(scales,percent)
importFrom(stats,addmargins)
importFrom(stats,aggregate)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,complete.cases)
importFrom(stats,cor.test)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,quantile)
importFrom(stats,reformulate)
importFrom(stats,relevel)
importFrom(stats,resid)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,head)
importFrom(utils,tail)
