ggtreeDendro
This is the released version of ggtreeDendro; for the devel version, see ggtreeDendro.
Drawing 'dendrogram' using 'ggtree'
Bioconductor version: Release (3.21)
Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.
Author: Guangchuang Yu [aut, cre, cph]
, Shuangbin Xu [ctb]
, Chuanjie Zhang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("ggtreeDendro")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggtreeDendro")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggtreeDendro")| Visualizing Dendrogram using ggtree | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3 years) |
| License | Artistic-2.0 |
| Depends | ggtree(>= 3.5.3) |
| Imports | ggplot2, stats, tidytree, utils |
| System Requirements | |
| URL |
See More
| Suggests | aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ggtreeDendro_1.10.0.tar.gz |
| Windows Binary (x86_64) | ggtreeDendro_1.10.0.zip |
| macOS Binary (x86_64) | ggtreeDendro_1.10.0.tgz |
| macOS Binary (arm64) | ggtreeDendro_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ggtreeDendro |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggtreeDendro |
| Bioc Package Browser | https://code.bioconductor.org/browse/ggtreeDendro/ |
| Package Short Url | https://bioconductor.org/packages/ggtreeDendro/ |
| Package Downloads Report | Download Stats |