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beachmat.tiledb

This is the released version of beachmat.tiledb; for the devel version, see beachmat.tiledb.

beachmat bindings for TileDB-backed matrices


Bioconductor version: Release (3.21)

Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat.tiledb")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat.tiledb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat.tiledb")
User guide HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.0.0
In Bioconductor since BioC 3.21 (R-4.5) (0.5 years)
License GPL-3
Depends
Imports methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp
System Requirements C++17
URL https://github.com/tatami-inc/beachmat.tiledb
Bug Reports https://github.com/tatami-inc/beachmat.tiledb/issues
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix
Linking To Rcpp, assorthead, beachmat
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package beachmat.tiledb_1.0.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64) beachmat.tiledb_1.0.0.tgz
macOS Binary (arm64) beachmat.tiledb_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/beachmat.tiledb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/beachmat.tiledb
Bioc Package Browser https://code.bioconductor.org/browse/beachmat.tiledb/
Package Short Url https://bioconductor.org/packages/beachmat.tiledb/
Package Downloads Report Download Stats