DNAcopy

This is the released version of DNAcopy; for the devel version, see DNAcopy.

DNA Copy Number Data Analysis

Bioconductor version: Release (3.21)

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAcopy")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")

biocViews	CopyNumberVariation, Microarray, Software
Version	1.82.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 20.5 years)
License	GPL (>= 2)
Depends
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	CGHcall, cghMCR, CRImage, PureCN, CSclone, ParDNAcopy, saasCNV
Imports Me	ADaCGH2, AneuFinder, ChAMP, cn.farms, CNAnorm, CNVrd2, conumee, GWASTools, maftools, MDTS, MEDIPS, MinimumDistance, QDNAseq, Repitools, SCOPE, jointseg, PSCBS
Suggests Me	cn.mops, CopyNumberPlots, fastseg, nullranges, sesame, ACNE, aroma.cn, aroma.core, calmate
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	DNAcopy_1.82.0.tar.gz
Windows Binary (x86_64)	DNAcopy_1.82.0.zip (64-bit only)
macOS Binary (x86_64)	DNAcopy_1.82.0.tgz
macOS Binary (arm64)	DNAcopy_1.82.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DNAcopy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DNAcopy
Bioc Package Browser	https://code.bioconductor.org/browse/DNAcopy/
Package Short Url	https://bioconductor.org/packages/DNAcopy/
Package Downloads Report	Download Stats