fraq_align              Align a query to a target
fraq_chunk              Chunk sequencing files into fixed-size batches
fraq_concat             Concatenate sequencing files
fraq_convert            Convert sequencing files between supported
                        formats
fraq_count_barcodes     Count barcodes in FASTQ file(s)
fraq_demux              Demultiplex FASTQ file(s) by barcode prefix
fraq_downsample         Downsample FASTQ file(s)
fraq_fifo_supported     Detect FRAQ FIFO support
fraq_mem_list           Manage in-memory FASTQ datasets
fraq_merge_pairs        Merge paired-end reads into a consensus
fraq_options            Get or set FRAQ options
fraq_quality_filter     Filter reads by whole-read quality
fraq_rcpp_template      Generate an example fraq Rcpp script
fraq_shortread          Bridge FRAQ formats with ShortReadQ
fraq_slice              Slice reads by index or limit
fraq_summary            Summarize FASTQ quality metrics (single- or
                        paired-end)
fraq_trim_adapters      Trim adapters from FASTQ file(s)
generate_random_fastq   Generate a random FASTQ file (optionally
                        gzipped)
