# Generated by roxygen2: do not edit by hand

S3method(boxplot,Zi)
S3method(heatmap,Zi)
S3method(mean,Zi)
S3method(median,Zi)
S3method(quantile,Zi)
export("deinflatedcounts<-")
export("inputcounts<-")
export("inputdata<-")
export("model<-")
export("weights<-")
export(MissingValueHeatmap)
export(deinflatedcounts)
export(heatmap)
export(inputcounts)
export(inputdata)
export(log2p)
export(model)
export(resample_deinflatedcounts)
export(subset_feature)
export(subset_sample)
export(weightedSd)
export(weightedVar)
export(weights)
export(zi2deseq2)
export(zi2phyloseq)
export(ziMain)
exportClasses(Zi)
exportMethods("*")
exportMethods("+")
exportMethods("-")
exportMethods("/")
exportMethods("deinflatedcounts<-")
exportMethods("inputcounts<-")
exportMethods("inputdata<-")
exportMethods("model<-")
exportMethods("weights<-")
exportMethods(assays)
exportMethods(colData)
exportMethods(colMeans2)
exportMethods(colMedians)
exportMethods(colQuantiles)
exportMethods(colSds)
exportMethods(colVars)
exportMethods(colWeightedMeans)
exportMethods(colWeightedSds)
exportMethods(colWeightedVars)
exportMethods(cor)
exportMethods(cov)
exportMethods(deinflatedcounts)
exportMethods(inputcounts)
exportMethods(inputdata)
exportMethods(log1p)
exportMethods(model)
exportMethods(otu_table)
exportMethods(plot)
exportMethods(rowData)
exportMethods(rowMeans2)
exportMethods(rowMedians)
exportMethods(rowQuantiles)
exportMethods(rowSds)
exportMethods(rowVars)
exportMethods(rowWeightedMeans)
exportMethods(rowWeightedSds)
exportMethods(rowWeightedVars)
exportMethods(sample_data)
exportMethods(sd)
exportMethods(show)
exportMethods(t)
exportMethods(tax_table)
exportMethods(var)
exportMethods(weighted.mean)
exportMethods(weights)
import(ggplot2)
import(pscl)
import(utils)
importFrom(BiocGenerics,sd)
importFrom(BiocGenerics,var)
importFrom(DESeq2,DESeqDataSet)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(MatrixGenerics,colMeans2)
importFrom(MatrixGenerics,colMedians)
importFrom(MatrixGenerics,colQuantiles)
importFrom(MatrixGenerics,colSds)
importFrom(MatrixGenerics,colVars)
importFrom(MatrixGenerics,colWeightedMeans)
importFrom(MatrixGenerics,colWeightedSds)
importFrom(MatrixGenerics,colWeightedVars)
importFrom(MatrixGenerics,rowMeans2)
importFrom(MatrixGenerics,rowMedians)
importFrom(MatrixGenerics,rowQuantiles)
importFrom(MatrixGenerics,rowSds)
importFrom(MatrixGenerics,rowVars)
importFrom(MatrixGenerics,rowWeightedMeans)
importFrom(MatrixGenerics,rowWeightedSds)
importFrom(MatrixGenerics,rowWeightedVars)
importFrom(RColorBrewer,brewer.pal)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(VGAM,dzinegbin)
importFrom(VGAM,dzipois)
importFrom(dplyr,any_vars)
importFrom(dplyr,bind_cols)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,filter_all)
importFrom(dplyr,mutate)
importFrom(dplyr,sample_n)
importFrom(dplyr,select)
importFrom(graphics,boxplot)
importFrom(magrittr,"%>%")
importFrom(matrixStats,weightedSd)
importFrom(matrixStats,weightedVar)
importFrom(methods,Arith)
importFrom(methods,show)
importFrom(phyloseq,"otu_table<-")
importFrom(phyloseq,"sample_data<-")
importFrom(phyloseq,"tax_table<-")
importFrom(phyloseq,otu_table)
importFrom(phyloseq,phyloseq_to_deseq2)
importFrom(phyloseq,sample_data)
importFrom(phyloseq,tax_table)
importFrom(phyloseq,taxa_are_rows)
importFrom(pscl,zeroinfl)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,dnbinom)
importFrom(stats,dpois)
importFrom(stats,heatmap)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,weighted.mean)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tidyr,replace_na)
importFrom(tidyr,spread)
