Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.15.0
Authors@R: 
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: 
    `orthogene` is an R package for easy mapping of orthologous genes 
    across hundreds of species. It pulls up-to-date gene ortholog mappings 
    across **700+ organisms**. 
    It also provides various utility functions to aggregate/expand 
    common objects (e.g. data.frames, gene expression matrices, lists) 
    using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, 
    both within- and between-species.  
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: GPL-3
Depends: R (>= 4.1)
VignetteBuilder: knitr
biocViews: Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,
        Transcriptomics, GeneExpression
Imports: dplyr, methods, stats, utils, Matrix, jsonlite, homologene,
        gprofiler2, babelgene, data.table, parallel, ggplot2, ggpubr,
        patchwork, DelayedArray, grr, repmis, ggtree, tools
Suggests: rworkflows, remotes, knitr, BiocStyle, markdown, rmarkdown,
        testthat (>= 3.0.0), piggyback, magick, GenomeInfoDbData, ape,
        phytools, rphylopic (>= 1.0.0), TreeTools, ggimage, OmaDB
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_: false
git_url: https://git.bioconductor.org/packages/orthogene
git_branch: devel
git_last_commit: 777f26b
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 00:56:46 UTC; biocbuild
Author: Brian Schilder [cre] (ORCID: <https://orcid.org/0000-0001-5949-2191>)
Maintainer: Brian Schilder <brian_schilder@alumni.brown.edu>
Built: R 4.5.0; ; 2025-06-05 13:36:21 UTC; windows
