Maser-class             S4 class to represent splicing events imported
                        from rMATS.
PSI                     Retrieve PSI (percent spliced in) values from a
                        maser object.
PSI,Maser,character-method
                        Retrieve PSI (percent spliced in) values from a
                        maser object.
annotation,Maser-method
                        Retrieve annotation of splicing events from a
                        maser object.
availableFeaturesUniprotKB
                        Query available human protein features in
                        UniprotKB.
boxplot_PSI_levels      Boxplots of PSI distributions by splicing type.
counts,Maser-method     Retrieve raw read counts values from a maser
                        object.
display                 Visualization of splicing events annotation
                        using an interactive data table.
dotplot                 Dotplot representation of splicing events.
filterByCoverage        Filter splicing events based on coverage.
filterByEventId         Filter splicing events based on event
                        identifier and type.
geneEvents              Retrieve splicing events for a given gene.
granges,Maser-method    Retrieve genomic ranges of splicing events from
                        a maser object.
mapProteinFeaturesToEvents
                        Mapping of splice events to UniprotKB protein
                        features.
mapTranscriptsToEvents
                        Mapping of splice events to Ensembl
                        transcripts.
maser                   Create a maser object by importing rMATS
                        splicing events.
pca                     Prinicipal component analysis of PSI
                        distributions.
plotGenePSI             Boxplots of Percent spliced-in levels for gene
                        events.
plotTranscripts         Mapping and visualization of Ensembl
                        transcripts affected by splicing.
plotUniprotKBFeatures   Mapping and visualization of UniprotKB protein
                        features affected by splicing.
splicingDistribution    Proportion of events by splicing type.
summary,Maser-method    Retrieve rMATS stats of differential splicing
                        from a maser object.
topEvents               Filter splicing events based on false discovery
                        rate and PSI change.
volcano                 Volcano plot of splicing events.
