Package: cBioPortalData
Title: Exposes and Makes Available Data from the cBioPortal Web
        Resources
Version: 2.22.1
Authors@R: c(
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", "aut"),
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
      c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")
    ),
    person("Karim", "Mezhoud", , "kmezhoud@gmail.com", "ctb")
  )
Description: The cBioPortalData R package accesses study datasets from
        the cBio Cancer Genomics Portal. It accesses the data either
        from the pre-packaged zip / tar files or from the API interface
        that was recently implemented by the cBioPortal Data Team. The
        package can provide data in either tabular format or with
        MultiAssayExperiment object that uses familiar Bioconductor
        data representations.
Depends: R (>= 4.4.0), AnVIL (>= 1.19.5), MultiAssayExperiment
Imports: BiocBaseUtils, BiocFileCache (>= 1.5.3), digest, dplyr,
        Seqinfo, GenomicRanges, httr, IRanges, methods, readr,
        RaggedExperiment, RTCGAToolbox (>= 2.19.7), S4Vectors,
        SummarizedExperiment, stats, tibble, tidyr, TCGAutils (>=
        1.9.4), utils
Suggests: BiocStyle, jsonlite, knitr, survival, survminer, rmarkdown,
        testthat
Date: 2025-07-21
License: AGPL-3
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/waldronlab/cBioPortalData
BugReports: https://github.com/waldronlab/cBioPortalData/issues
biocViews: Software, Infrastructure, ThirdPartyClient
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Collate: 'utils.R' 'cBioDataPack.R' 'cBioPortal-class.R' 'cBioPortal.R'
        'cBioPortalData-pkg.R' 'cBioPortalData.R' 'cache.R'
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-11-07 18:29:26 UTC
RemoteUrl: https://github.com/bioc/cBioPortalData
RemoteRef: RELEASE_3_22
RemoteSha: 567daa3c5dba1ce6e91d8006b6bb17a11f7702fa
NeedsCompilation: no
Packaged: 2025-11-11 14:22:43 UTC; root
Author: Levi Waldron [aut],
  Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Karim Mezhoud [ctb]
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>
Built: R 4.5.2; ; 2025-11-11 14:28:38 UTC; windows
