# Generated by roxygen2: do not edit by hand

export(allelicRatio)
export(cellQC)
export(consensusPart)
export(estDisp)
export(extractResult)
export(featureQC)
export(fusedLasso)
export(geneCluster)
export(makeForest)
export(makeHeatmap)
export(makeOffByOneAdjMat)
export(makeSimulatedData)
export(makeStep)
export(makeViolin)
export(preprocess)
export(summaryAllelicRatio)
export(wilcoxExt)
import(forestplot)
import(ggplot2)
import(grid)
import(lpSolve)
import(smurf)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,anno_block)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,counts)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(apeglm,apeglm)
importFrom(apeglm,bbEstDisp)
importFrom(clue,as.cl_hard_partition)
importFrom(clue,cl_consensus)
importFrom(clue,cl_ensemble)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(emdbook,dbetabinom)
importFrom(emdbook,rbetabinom)
importFrom(grDevices,rainbow)
importFrom(graphics,par)
importFrom(matrixStats,rowSds)
importFrom(mclust,Mclust)
importFrom(mclust,hc)
importFrom(mclust,hcEII)
importFrom(mclust,mclustBIC)
importFrom(pbapply,pblapply)
importFrom(pbapply,pbsapply)
importFrom(plyr,mutate)
importFrom(rlang,.data)
importFrom(scater,nexprs)
importFrom(splines,ns)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,gaussian)
importFrom(stats,hclust)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,pairwise.wilcox.test)
importFrom(stats,pchisq)
importFrom(stats,prcomp)
importFrom(stats,rnbinom)
importFrom(stats,terms)
importFrom(stats,var)
importFrom(stats,weighted.mean)
importFrom(utils,head)
importFrom(utils,packageVersion)
