Package: VariantTools
Type: Package
Title: Tools for Exploratory Analysis of Variant Calls
Version: 1.52.0
Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman
Maintainer: Michael Lawrence <lawremi@gmail.com>
Description: Explore, diagnose, and compare variant calls using
        filters.
Depends: R (>= 3.5.0), S4Vectors (>= 0.17.33), IRanges (>= 2.13.12),
        GenomicRanges (>= 1.31.8), VariantAnnotation (>= 1.11.16),
        methods
Imports: Rsamtools (>= 1.31.2), BiocGenerics, Biostrings, parallel,
        GenomicFeatures (>= 1.31.3), Matrix, rtracklayer (>= 1.39.7),
        BiocParallel, GenomeInfoDb, BSgenome, Biobase
Suggests: RUnit, LungCancerLines (>= 0.0.6), RBGL, graph, gmapR (>=
        1.21.3), TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
License: Artistic-2.0
LazyLoad: yes
biocViews: Genetics, GeneticVariability, Sequencing
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:12:36 UTC
RemoteUrl: https://github.com/bioc/VariantTools
RemoteRef: RELEASE_3_22
RemoteSha: a3304e53cc7eb3e1bca6796b260a1a7767ebdd57
NeedsCompilation: no
Packaged: 2025-12-27 08:19:47 UTC; root
Built: R 4.5.2; ; 2025-12-27 08:22:58 UTC; windows
