Package: BEclear
Type: Package
Title: Correction of batch effects in DNA methylation data
Version: 2.26.0
Date: 2023-04-06
Authors@R: c(person("Livia", "Rasp", email = "livia.rasp@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-0164-2163")),
             person("Markus", "Merl", role = "aut"),
             person("Ruslan", "Akulenko", role = "aut"))
Description: Provides functions to detect and correct for batch effects
        in DNA methylation data. The core function is based on latent
        factor models and can also be used to predict missing values in
        any other matrix containing real numbers.
License: GPL-3
SystemRequirements: C++11
Depends: BiocParallel (>= 1.14.2)
Imports: futile.logger, Rdpack, Matrix, data.table (>= 1.11.8), Rcpp,
        abind, stats, graphics, utils, methods, dixonTest, ids
Suggests: testthat, BiocStyle, knitr, rmarkdown, pander, seewave
VignetteBuilder: knitr
biocViews: BatchEffect, DNAMethylation, Software, Preprocessing,
        StatisticalMethod
RoxygenNote: 7.2.2
RdMacros: Rdpack
Encoding: UTF-8
URL: https://github.com/uds-helms/BEclear
BugReports: https://github.com/uds-helms/BEclear/issues
LinkingTo: Rcpp
Config/pak/sysreqs: libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:26:04 UTC
RemoteUrl: https://github.com/bioc/BEclear
RemoteRef: RELEASE_3_22
RemoteSha: 575a6dfa1361f6e555bd95e567f672ea90d8b8be
NeedsCompilation: yes
Packaged: 2025-11-11 13:16:29 UTC; root
Author: Livia Rasp [aut, cre] (ORCID: <https://orcid.org/0000-0003-0164-2163>),
  Markus Merl [aut],
  Ruslan Akulenko [aut]
Maintainer: Livia Rasp <livia.rasp@gmail.com>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 13:18:33 UTC; windows
Archs: x64
