| acc |
Methods for Accessibility Lists |
| acc,clusterGraph,character-method |
Methods for Accessibility Lists |
| acc,clusterGraph-method |
Methods for Accessibility Lists |
| acc,graph,character-method |
Methods for Accessibility Lists |
| acc,graph-method |
Methods for Accessibility Lists |
| acc-methods |
Methods for Accessibility Lists |
| addEdge |
addEdge |
| addEdge,character,character,graphNEL,numeric-method |
Class "graphNEL" |
| addNode |
addNode |
| addNode,character,distGraph,list-method |
addNode |
| addNode,character,graphNEL,list-method |
addNode |
| addNode,character,graphNEL,missing-method |
addNode |
| addNode,character,graphNEL-method |
Class "graphNEL" |
| adj |
Methods for finding the adjacency list for selected nodes. |
| adj,clusterGraph-method |
Class "clusterGraph" |
| adj,distGraph-method |
Class "distGraph" |
| adj,graphNEL-method |
Class "graphNEL" |
| adj-methods |
Methods for finding the adjacency list for selected nodes. |
| aM2bpG |
Coercions between matrix and graph representations |
| apopAttrs |
KEGG apoptosis pathway graph |
| apopGraph |
KEGG apoptosis pathway graph |
| apopLocusLink |
KEGG apoptosis pathway graph |
| asGraphProperty |
Generic for converting input to graph property list |
| asGraphProperty,list,logical-method |
Generic for converting input to graph property list |
| asGraphProperty,list,missing-method |
Generic for converting input to graph property list |
| asGraphProperty,numeric,logical-method |
Generic for converting input to graph property list |
| asGraphProperty,numeric,missing-method |
Generic for converting input to graph property list |
| asGraphProperty-methods |
Generic for converting input to graph property list |
| aveNumEdges |
Calculate the average number of edges in a graph |
| calcProb |
Calculate the hypergeometric probability of the subgraph's number of edges. |
| calcSumProb |
Calculate the probability that a subgraph has an unusual number of edges. |
| clearNode |
clearNode |
| clearNode,character,graphNEL-method |
Class "graphNEL" |
| clusterGraph-class |
Class "clusterGraph" |
| clusteringCoefficient |
Clustering coefficient of a graph |
| clusteringCoefficient,graph,ANY-method |
Clustering coefficient of a graph |
| clusteringCoefficient,graph-method |
Clustering coefficient of a graph |
| coerce |
Class "graphNEL" |
| coerce,generalGraph-method |
Class "generalGraph" ~~~ |
| coerce,graphNEL,generalGraph-method |
Class "graphNEL" |
| coerce,graphNEL,matrix-method |
Coercions between matrix and graph representations |
| coerce,matrix,graphNEL-method |
Coercions between matrix and graph representations |
| combineNodes |
combineNodes |
| combineNodes,character,graphNEL,character-method |
Class "graphNEL" |
| complement |
Class "graph" |
| complement,graph-method |
Class "graph" |
| connComp |
Class "graph" |
| connComp,clusterGraph-method |
Class "clusterGraph" |
| connComp,graph-method |
Class "graph" |
| connection-class |
Methods for GXL manipulations in package graph |
| contents |
Class "hashtable" |
| contents,hashtable,ANY-method |
Class "hashtable" |
| contents,hashtable-method |
Class "hashtable" |
| edgeID |
Class "gEdge" |
| edgeID,gEdge-method |
Class "gEdge" |
| edgeL |
Class "graphNEL" |
| edgeL,graphNEL-method |
Class "graphNEL" |
| edgeMatrix |
Compute an Edge Matrix or weight vector for a Graph |
| edgeMatrix,clusterGraph-method |
Compute an Edge Matrix or weight vector for a Graph |
| edgeMatrix,distGraph-method |
Compute an Edge Matrix or weight vector for a Graph |
| edgeMatrix,graphNEL-method |
Compute an Edge Matrix or weight vector for a Graph |
| edgemode |
Class "graph" |
| edgemode,graph-method |
Class "graph" |
| edgemode<-,graph,character-method |
Class "graph" |
| edgeNames |
Class "graph" |
| edgeNames,graph-method |
Class "graph" |
| edgeOrder |
Class "gNode" |
| edgeOrder,gNode-method |
Class "gNode" |
| edges |
Class "graphNEL" |
| edges,clusterGraph,character-method |
Class "clusterGraph" |
| edges,clusterGraph,missing-method |
Class "clusterGraph" |
| edges,distGraph,character-method |
Class "distGraph" |
| edges,distGraph,missing-method |
Class "distGraph" |
| edges,graphH,character-method |
Class "graphH" |
| edges,graphH,missing-method |
Class "graphH" |
| edges,graphNEL,character-method |
Class "graphNEL" |
| edges,graphNEL,missing-method |
Class "graphNEL" |
| edgeWeights |
Retrieve the edge weights for specified indices. |
| edgeWeights,clusterGraph-method |
Class "clusterGraph" |
| edgeWeights,distGraph-method |
Class "distGraph" |
| edgeWeights,graphNEL-method |
Class "graphNEL" |
| eNode |
Class "gEdge" |
| eNode,gEdge-method |
Class "gEdge" |
| eWV |
Compute an Edge Matrix or weight vector for a Graph |
| idstring |
Class "graphH" |
| idstring,gEdge-method |
Class "gEdge" |
| idstring,gNode-method |
Class "gNode" |
| idstring,graphH-method |
Class "graphH" |
| IMCA |
KEGG Integrin Mediated Cell Adhesion graph |
| IMCAAttrs |
KEGG Integrin Mediated Cell Adhesion graph |
| IMCAGraph |
KEGG Integrin Mediated Cell Adhesion graph |
| inEdges |
inEdges |
| inEdges,character,graphNEL-method |
Class "graphNEL" |
| inEdges,graphNEL,missing-method |
inEdges |
| inEdges,missing,graphNEL-method |
Class "graphNEL" |
| initialize |
Class "graphNEL" |
| initialize,gEdge-method |
Class "gEdge" |
| initialize,generalGraph-method |
Class "generalGraph" ~~~ |
| initialize,gNode-method |
Class "gNode" |
| initialize,graphH-method |
Class "graphH" |
| initialize,graphNEL-method |
Class "graphNEL" |
| initialize,hashtable-method |
Class "hashtable" |
| int2ftM |
Standard labeling of edges with integers |
| integrinMediatedCellAdhesion |
KEGG Integrin Mediated Cell Adhesion graph |
| intersection |
Class "graph" |
| intersection,graph,graph-method |
Class "graph" |
| intersection2 |
Class "graph" |
| intersection2,graph,graph-method |
Class "graph" |
| intersection3 |
Class "graph" |
| intersection3,graph,graph-method |
Class "graph" |
| isConnected |
Class "graph" |
| isConnected,graph-method |
Class "graph" |