5db4f9457dcd0888982d78e7d7e5aef6 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
7f0ec1243cbec2263cfe06df1c46aa4d *NAMESPACE
bd51ee6f406e6675d99b58e027074813 *NEWS.md
08c2683f0c828d51a4fbf7e67e29e0f9 *R/data.R
9d330e5bbc255f2b177977f78ecbc717 *R/eruption.R
4f9e66e3c982bc769baaddd70d85cc77 *R/getPathwayDistances.R
a1ec1c90ebfee42935153c59889ef486 *R/globals.R
c5069bc15ba88331f1829d809947bb48 *R/pathlinkR.R
51ae1acf30a229762d955724031f4abe *R/pathnetCreate.R
644b36007205a9873c5dc72565864587 *R/pathnetFoundation.R
d33e77ade45ad2e55b354251bf9eb85c *R/pathnetGGraph.R
13e809617f3680b5ecbd589ca36efe21 *R/pathnetVisNetwork.R
051eadb927a928630f2c48938862c36a *R/pathwayEnrichment.R
3cf8586753d6f54b6012f0088e035c85 *R/pathwayPlots.R
0f7526edf50c5ae5be5193e94412d42c *R/plotFoldChange.R
eb1135b0ce8c1aa6daf26a371205ae5d *R/ppiBuildNetwork.R
4c94cd10dc1e70a5d2ec51e373182aac *R/ppiCleanNetwork.R
1dab540c431fed9663ca498c47e90260 *R/ppiEnrichNetwork.R
69b2dbb6314cedcd3670a06499e288c5 *R/ppiExtractSubnetwork.R
920fef1316e9313f14e03e5c1065fa7c *R/ppiPlotNetwork.R
bcc092a0d3f3070af5dc40fe1297ce8f *R/ppiRemoveSubnetworks.R
7f913f0d4e7dddf5c16b354219dabb77 *R/truncNeatly.R
6c6598782f09a9d8bed50b01ef3a9b81 *R/zzz.R
4aedf7d1cfa06165380f688b63478f64 *README.md
885632c93774ce45a1b482b4bb1adce0 *build/vignette.rds
fbb6b51299129924cee07e151de39a04 *data/datalist
323824b3503d8164d755d271692c8801 *data/exampleDESeqResults.rda
e927f6563cf7044881f6947f456c2afc *data/groupedPathwayColours.rda
2f9c3f604398343f848c7940bcf74169 *data/hallmarkDatabase.rda
39bf7ddedaaf6f7edfe0e1cbdb8b6cf2 *data/innateDbPPI.rda
4458b63ae383f2de060e07b72ff57411 *data/keggDatabase.rda
2776e5f6afdc9944a3614a2e8fa4b125 *data/mappingFile.rda
2620de4611a4fb6e32e8fe61e5a85fa3 *data/pathwayCategories.rda
06b06744fa4e6e6c9eb05c0c000df7c9 *data/reactomeDatabase.rda
7725a20789219eeb11d0f1b25009fb11 *data/sigoraDatabase.rda
52b6503b8cf31096f55e0669c1f7773b *data/sigoraExamples.rda
d7e8d4b71fa75290e75d33e2de0c355d *inst/doc/pathlinkR.R
1baa1d49a4e0d351d41538bf8ddffbeb *inst/doc/pathlinkR.Rmd
66364d0c4f786e810a667f67ed42f413 *inst/doc/pathlinkR.html
78d86e05cf665c19f2fe09492a91604b *inst/extdata/manualDupeAnnotation.tsv
92052a38447d1c23e31224ac1a0e5552 *inst/extdata/networkAnalystExample.json
1e2d58eaa7b58da6cf6eef42746cde0d *inst/script/groupedPathwayColours.R
5501eb68252eef47d17af0901c80ab7c *inst/script/hallmarkDatabase.R
0f185eaecc80416fb7e4e833340413cc *inst/script/innateDbPPI.R
9b55ecff2e8d2fae94380b97df350f5a *inst/script/keggDatabase.R
ba64762fce6cd31e5ca6136c1ea186ed *inst/script/mappingFile.R
62efb2b189aec5c188e9d8edeef104f6 *inst/script/networkAnalystExample.txt
cd949c135a9add035615ae13b880ffe8 *inst/script/pathwayCategories.R
aa6722e7ce136f0a503c18e08a9aa1bc *inst/script/reactomeDatabase.R
41a22e2ce3fa3866ab5a3b4f8f8e8d30 *inst/script/sigoraDatabase.R
967f0cb5c7634c53aa360a1043a5b246 *inst/script/sigoraExamples.R
4deb2ad2b1c04bab984d6147f894eb1d *man/dot-eruptionBreaks.Rd
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c03cc8aa30659d8b74a103c2bb072873 *man/dot-runSigora.Rd
9a6ee5f137bdd56b7ef9718badc42904 *man/dot-truncNeatly.Rd
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7e925897619f67c211c07c1bd759b5ac *man/exampleDESeqResults.Rd
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c06708b3db4cf2d5e53069efa4cdbf84 *man/groupedPathwayColours.Rd
463e2dee131e7e1a0add9ea9c9ca7d2f *man/hallmarkDatabase.Rd
afad5a0f0b12057cafb2ed78684d43c8 *man/innateDbPPI.Rd
755f9e4d22d62dbc8e26614c029c4812 *man/keggDatabase.Rd
50327b5fe3c2b3f7f670ea6bba5afeef *man/mappingFile.Rd
8c651eddddc872e48022eb5e55e11dfb *man/pathlinkR-package.Rd
38b4184928e0599db8f4eec7e9233a3a *man/pathnetCreate.Rd
508d23bb31b1056f19502f1c7777bc3d *man/pathnetFoundation.Rd
69cb0fd5db3bd3def27d10de6b96a65a *man/pathnetGGraph.Rd
4aff178d2fbde356283868d267de4e72 *man/pathnetVisNetwork.Rd
37d396d4950fd82a068f1dce1250ed92 *man/pathwayCategories.Rd
3eb35e3465a0ec0dbf1af98062027168 *man/pathwayEnrichment.Rd
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ac6c1ee00127fc51e45ac755c867568e *man/plotFoldChange.Rd
732045941c461e613162bf3a59f88664 *man/ppiBuildNetwork.Rd
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1643ea2e37d70fb49e0305c8f194cd38 *man/ppiEnrichNetwork.Rd
22bf87c130b01d2554f13706d104628b *man/ppiExtractSubnetwork.Rd
16e62d8221bf021b9dfc354795e43c11 *man/ppiPlotNetwork.Rd
52b62ec607171d8d46eb726598119d69 *man/ppiRemoveSubnetworks.Rd
72521619062252f55029a8d0d60fe76d *man/reactomeDatabase.Rd
82e9ed2064d7395f21e4fea0e3e15cbb *man/sigoraDatabase.Rd
bab0548da0468d1d127b592a36640b54 *man/sigoraExamples.Rd
040a804f1251c3c34d4ceea777554877 *tests/testthat.R
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9cc28698fe512bc78c3af25ae0adc546 *tests/testthat/test-getPathwayDistances.R
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7e5ef27bfcdb15bff106e704d9099b6f *tests/testthat/test-pathnetFoundation.R
3b7e0235eb032b48c09886b7f7882eb6 *tests/testthat/test-pathnetGGraph.R
7665a126da1d73903a4baf65229f81af *tests/testthat/test-pathnetVisNetwork.R
3abca56e41707d2ac42c1a87e2d03cc7 *tests/testthat/test-pathwayEnrichment.R
537e6d7a77fc7e0f85bb7d52d882f4aa *tests/testthat/test-pathwayPlots.R
0b408e963997d3a09592daef9bbd5c8a *tests/testthat/test-plotFoldChange.R
81ea1bac9884e1a2b3d3ecee9e5bbe8e *tests/testthat/test-ppiBuildNetwork.R
4d5571143db24eca64f1b022640e33c3 *tests/testthat/test-ppiCleanNetwork.R
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ace2e5b12de80fbcb5864cf22536c585 *tests/testthat/test-runSigora.R
3b02439725b5f8c6d502b8cbbfea5bca *tests/testthat/test-truncNeatly.R
1baa1d49a4e0d351d41538bf8ddffbeb *vignettes/pathlinkR.Rmd
