eda8e893b273d438a347afa5116a25d0 *CLAUDE.md
52644fccff39a9377e0faa0e95ddb5be *DESCRIPTION
f84a959b7361371d8a3c57ce9c0159f5 *NAMESPACE
a4d4bff34ae30665c84970d0af395248 *NEWS
a04e09971330d0c8fef183223e43f58e *R/00_documentation_template.R
636d0a0201beb5ec27817c173f7bca43 *R/00_export_getAutoRIF.R
687581338f58e3872652089a6a0f027c *R/00_export_prepEsetViewer.R
3887a23a4e81b68cf650fa47e47f2eca *R/00_export_runExpressionSetViewer.R
1e67e341c47825c95b794762a3118f17 *R/L0_module_app.R
d16674beaaf10aacdcd89dc9b254109b *R/L1_module_data_space.R
dd2c4482d1d8dc6a9cb9fab7775d5b08 *R/L1_module_result_space.R
04b69506d73a0b21dd0578212c4f2661 *R/auxi_ROC_PR.R
0263bb9f9826199a2777513bfc42e2f0 *R/auxi_databaseFormat.R
710b399e84e4a6e7ef337100fe5184f3 *R/auxi_error_handling.R
257bd9ba65fc371e0702749e197eb3cf *R/auxi_fgsea.R
417234069d8ca906ee5e132f491d4553 *R/auxi_figureAttr4.R
0fc501645f407f3ba3b46910c667e53f *R/auxi_gsAnnotatedDF.R
4498f7115c45a8c4d0b119ccb65caac8 *R/auxi_plotly.R
cec9da8f7c0c922fc5b100b7bd489b67 *R/auxi_ptmotif.R
70c564b8d5da54fb1bc89520765f00a7 *R/auxi_queryStringdb.R
d5f3bb15662baeeb1df3ed678f813da6 *R/auxi_shiny_misc.R
3d6a5c1678c8f040573b62568ffb8603 *R/auxi_sparse_converter.R
ed2c95063f15cad6e0a6d29928f22c8c *R/auxi_stats.R
3d985b19d31bcdf4a1f30cf082a91b69 *R/auxi_validation.R
e019ad6d97ae8b7390a2dcb94ded973f *R/auxi_vectORA.R
a5021440252db38edd3ad699b0bb33cb *R/constants.R
470fb14677707cdfaafa70a0ce3194ae *R/heatmapshinyApp.R
8e3cfcd9b442ea9ef3f649d5a07ddeeb *R/heatmapshiny_auxi.R
87ecfc5c5b8bcc63dd8b79ff10e8f70f *R/module_PTMotif.R
936b08edd89473cb7931557d9ebdf70e *R/module_barplotGsea.R
c80412b872902a0a27f701976c3f7777 *R/module_batch_comparison.R
53a93b62c1b134535be897e1de928eb3 *R/module_boxplot.R
c19e928432c8e92d96acffc3ac48ea9f *R/module_contTableStats.R
fc63914aeadbe798859547c1234fcbec *R/module_dataTable.R
63eab78753fd710a71b259b21c95f218 *R/module_dataTableDownload.R
5cd6533c32e22ecc4a814bedec3a8c93 *R/module_doseResponse.R
7dacf62fa280784a75cc6e36026e29d8 *R/module_feature_general.R
63bd6c947f26d7cf0bc8f683cb7e19a9 *R/module_fgsea.R
086fa9bac34dd6c0193d949691597110 *R/module_figureAttr4.R
6a2aab7533d1452bef378fc73e7da3e5 *R/module_geneshot.R
a06dead8515609c3c7aaa1f820ac8f40 *R/module_gsList.R
5c53fec0f62f2fcfd21158cf309708a5 *R/module_meta_scatter.R
30791298dcf720db5bef653533708814 *R/module_ora.R
c56660b3269a289c505f6a7b767b5399 *R/module_roc_pr.R
a6bee7a727fba753bc2e3d33eed1e787 *R/module_sample_general.R
9190ba0db7c05ee7a4301e0c5a51846d *R/module_scatter.R
8a71e1e12552e35543f2d1ff369c56e2 *R/module_string.R
ba13a93fdffc74770679cc4e30001e98 *R/module_survival.R
72820606ebe947218a894cf0f5be91a0 *R/module_triselector.R
ce19b5aa24b46ac4e7ed84a6a318d9b7 *R/proc_doseCurve.R
ff5ee794872297a39d7abbe534feb0ba *R/proc_funs.R
1cb01905612b4188018a7695d093bb4f *R/proc_parseDat.R
55ee29118c251647f68feab86245759a *README.md
8f70753e8a980a1710ede63ff7f332c5 *build/vignette.rds
2c716eebfb8ee7a61a27036884da036e *index.html
6e7612ab0c2dd0122ef547aabf622754 *inst/doc/quickStart.R
e49406c019ab4edf6da6c6da38980243 *inst/doc/quickStart.html
c59da537e4d60fc468092dade06fc3fd *inst/doc/quickStart.rmd
5788acc609eb4655a00ce32258f721d5 *inst/extdata/Dockerfile
b4375c45fec81a6d04eefc87d98766e6 *inst/extdata/app/server.R
c63db1038dacaed4e80b9acc1d1b17f9 *inst/extdata/app/ui.R
a96b066b62bfd495f36d01b3e311d189 *inst/extdata/demo.RDS
fd394db5423d2e32331375ca537c5cae *inst/extdata/expressionMatrix.tsv
ca034d14039e05b92eace7c897e7bf7f *inst/extdata/featureGeneral.tsv
e9d9882a35b132fae4ab3a05738d6e2c *inst/extdata/geneset.gmt
e3e85ec88fc51a985e963be92209c7d7 *inst/extdata/install_shiny_server.sh
89bb328e78e57a04ef3c215f9811c5ee *inst/extdata/sampleDrug.tsv
1c88264377760da3057d492a88413a77 *inst/extdata/sampleGeneral.tsv
a5813dd6921df01afc223186ac32d4f9 *inst/extdata/sampleSurv.tsv
95f3696933d12001aed38bdf1c2d0cac *inst/script/make-metadata.R
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7053e76680e450bc190b9020f870fbc3 *man/L1_data_space_ui.Rd
8463578d6c00792bf345bc19b81a2671 *man/L1_result_space_module.Rd
ab6d23044790907c5d94835381d8c0c3 *man/L1_result_space_ui.Rd
5b0d066e4066562edb8e2897987221d5 *man/app_module.Rd
07057c54c9ef112df16a6edf99ff89c6 *man/app_ui.Rd
b9948c2c0cc05ba6f211ff62714b9ecf *man/asEsetWithAttr.Rd
1255cd9ecc48905e93100b60cab7f1b9 *man/batch_comparison_module.Rd
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17350a7af4a7ed385ee4160c60a6aed9 *man/constants.Rd
495228f98dd791cf56bae9d363aa17db *man/correlationAnalysis.Rd
bb03fb7748eb492ef5e6d8baa9ea582b *man/csc2list.Rd
651b81a49910e72b7d3387fa23d9fb87 *man/documentation_template.Rd
1835f8c1fbf2ee16eb04b0e5634746da *man/dose_response_module.Rd
eb059d347d5840d73e3de66bd22b126b *man/dose_response_ui.Rd
722035fa747ea6d5fde582aace925962 *man/dot-e2EC50.Rd
8e5750fd7688957ac5b906a4b0c88f5e *man/dot-modelFormula.Rd
54d71e19376f8650fe367b94ad19275a *man/downloadUPRefProteome.Rd
793842961ef1af58290e7821fda2f684 *man/draw_roc_pr.Rd
04fe17018108b7dbb5e992e15cc32939 *man/drmMat.Rd
7c7f7f12994b33157746dfe3040fefba *man/error_handling.Rd
c5d6ce78ad86d49516eb8b05fb0368b7 *man/exprspca.Rd
47a8a929e0cf7137d2656ac53e06985a *man/extendMetaData.Rd
b9dc1022689e1293de69735637996057 *man/extractParamDC.Rd
2a33a11e68333a0ae3f2874880646e5d *man/extractParamDCList.Rd
1da9e6a0f997771f04611227d8fc8d9d *man/fgsea1.Rd
205b4784e12df07459979f6ef6e95186 *man/fillNA.Rd
d76fea7c6fcaf4654ed6449361ced2df *man/filterRow.Rd
4b8940b77aee7014afe6dd343f78242b *man/geneshot_module.Rd
cc63d82c9bdca5b9ea68e64023a71a11 *man/geneshot_ui.Rd
0cb60fdb09744daac476544602eb786e *man/getAutoRIF.Rd
3a4eb130f32fec3044611ff73ab4e02b *man/getMQParams.Rd
66f03ae02df7d588600d6626c6918aae *man/getStringId.Rd
4e73cf1bbf0c2d14afed66d89b7a53ca *man/gsAnnotIdList.Rd
ac3e775440fcadda1bc3caf23584db5f *man/gslist_module.Rd
068bd8e2929b226d4b8339331ad1b1dd *man/gslist_ui.Rd
782e6ba27a02b1053a296b5519acfcb8 *man/hasAttr.Rd
1032be23915fe4cdf3292e7d9849d229 *man/hclust2str.Rd
8b51b84fbf7b6e3fa8987ba5a833fed5 *man/jaccardList.Rd
a3ec8acae5a1b4dd6cf3e4c3f58b8143 *man/list2csc.Rd
98248b380c972c37b18dc59d753928a7 *man/meta_scatter_module.Rd
5bfd0edb599b9035580cd51f4ab771a9 *man/meta_scatter_ui.Rd
8cbbcb7b2725787c1eccc9b7ee3f63a2 *man/multi.t.test.Rd
378148ea8f2ba87f58adce543d565a01 *man/nColors.Rd
743a21925f28cd4ed1b80eccab8d091d *man/normalize.nQuantiles.Rd
199741a98936d17b68866bd40970f262 *man/normalize.totsum.Rd
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a581ebbeafb2b5180e893447f380aa57 *man/normalizeData.Rd
0129ea08558699d00aac0449d1ffba2e *man/omicsViewer.Rd
162d1bff5ea27704c5ee412871c02680 *man/parseDatTerm.Rd
9a96315cbcdda238815410ae3396b680 *man/plotDC.Rd
db97f95e6ed526ba0ae8b5be6581b07c *man/plotDCMat.Rd
6805c55c80d90bf12a42845b078703ec *man/plot_roc_pr_module.Rd
2174f57d9df6b8e2eebd639632a75d36 *man/plotly_boxplot_module.Rd
29ac2fb2bc761d8170bf9d13d47c4a00 *man/plotly_boxplot_ui.Rd
2a07f59d86a6c01be85727ec37ce0681 *man/plotly_scatter_module.Rd
6093d749db8f283071ce1c0df87b7ea5 *man/plotly_scatter_ui.Rd
9a1e37c8bc4c901af6a806e029117f79 *man/prepOmicsViewer.Rd
412d44dc33b803a52d7e733e8763d267 *man/read.proteinGroups.Rd
ec945cd194d5993843a96c275f2670c3 *man/read.proteinGroups.lf.Rd
fa3bde42a727b4ca8cbca1bd6c47d6d3 *man/readESVObj.Rd
7da42029429dd9904df2b6b588660495 *man/read_gmt.Rd
a2cdc4bbb84e2a65f7acabd2b6f1228a *man/removeVarQC.Rd
0da97abaa5cb46fcf382361f462fb5e0 *man/rowshift.Rd
48f16984a02d0f1859486c4c1d60a756 *man/safe_GET.Rd
446bec648d04538b816f6c58db8606ff *man/safe_POST.Rd
ffacacb357b1dcedb90e8651f452fc6b *man/saveOmicsViewerDb.Rd
cc85d33af47f03d58567ab7c3b2e3478 *man/stringD3Net.Rd
11b245f5e39af7e33b66ee0ef9319d02 *man/stringGSA.Rd
e0fed734480bd9ebcde16be66cfe3666 *man/stringNetwork.Rd
8e273e2dd896ee931a2281fffbb3bd3b *man/string_module.Rd
eb895d8071d15284e43cfb98c1ad2deb *man/string_ui.Rd
cb932f15a2aaf44cc31fcf77d19cc086 *man/triselector_module.Rd
043773fe2efb34646b19f1f3ea7c8adf *man/triselector_ui.Rd
61722d92a8789e045e53633052c278cd *man/trisetter.Rd
fa9bd3875b32d23e9d82c9ed4ace79ce *man/validMQFolder.Rd
71b237bead5698576f3f266db746892d *man/validate_api_response.Rd
7f32651581b44e9710477cae44a6f0cd *man/validate_character_vector.Rd
5969050bd2996e6e7754eab4a115cc07 *man/validate_dataframe.Rd
7cb73a0287f444f2c42b1fd72520feaf *man/validate_matching_dimensions.Rd
a8c88b8c245d4662ccda9b6005809b9d *man/validate_numeric_matrix.Rd
03182a37842f0b572da1d6e65d3dc6c7 *man/validate_numeric_range.Rd
383bb539846ed8ce86dc829a0a6417f6 *man/validate_triselector_input.Rd
25abc13d1481afd37b4fdbf8aa446e3e *man/varSelector.Rd
dc1670052841655cc524da47a70a282e *tests/test_auxi_sparse_converter.R
87cd1a75a75ed804db54b8715a17807f *tests/test_db_vs_esv.R
bc75293f9bf86b321098e78535541420 *tests/test_dose_response.R
e3cc85c9668ffb657f76bf92e5e3221a *tests/test_motif.R
0ef65b7d891f9af80cac5b49b9750c56 *tests/test_ora.R
5f47d59800d7b2350bb251c46e69736f *tests/test_shinyAuxi.R
5690a272327d80dae5026d39045f1738 *tests/test_stats.R
c59da537e4d60fc468092dade06fc3fd *vignettes/quickStart.rmd
