00d704687f13383825cb5e702604290e *DESCRIPTION
7db72b7e01004751c5cf9d9eb2c9122c *EventPointer.Rproj
4e6236b781c03714bc404747c656e4dc *NAMESPACE
5d5e4382da837631fba49152040119ff *NEWS
aaca4e78a5f4108d8ced7c5e845d2874 *R/AllEvents_RNASeq.R
8ba928e2f5950a70f2f83ca1f8d62ff2 *R/AllEvents_RNASeq_MP.R
d1da3fcbed32bc70d8a6796faa6dc698 *R/ArrayDatamultipath.R
2e67ccafe1762e2b2b582fca6ce9e27d *R/ArraysData.R
f0319b9c2eb4cabd077ddadca6005b8b *R/AuxFunctions.R
233c640e5c45355aca16e43a556bbbcf *R/CDFfromGTF.R
d813e5b4fe2ace507090b494369ce111 *R/CDFfromGTF_Multipath.R
aafe2d63b30dbcaa01686b1af10db68e *R/CreateExSmatrix.R
b4e0354ca6d8454a3ab5e120d07f92eb *R/EventDetection.R
c0ad86dc19681ce4a73674f6d15f8015 *R/EventDetectionAnn.R
cd4cded131e1847fb613da77201fa404 *R/EventDetectionMultipath.R
72045e094b260db1b4e4501ed026c895 *R/EventDetection_transcriptome.R
4b0ce112c671d17ad4edbed57bb12145 *R/EventPointer.R
ebe6b7f1234f21a3dbb2579c8ddca17f *R/EventPointerStats_BAM.R
fea15d37fee2d44671d0948f9cb7e83f *R/EventPointer_Bootstraps.R
04f6fc027a4d1a466e08634149f5894e *R/EventPointer_IGV.R
25906c91c1d916fbe275427b2a9e89d3 *R/EventPointer_RNASeq.R
594e6da6a13b5351ca9a398c2fb5c2bf *R/EventPointer_RNASeq_IGV.R
9f3c5fe0e7cbf789b9b363b56506556c *R/EventPointer_RNASeq_TranRef.R
cebb8bae59c59fd4a03853bc14e0132c *R/EventPointer_RNASeq_TranRef_IGV.R
1075dafd40cf3fb5f86d651525b278f9 *R/EventXtrans.R
9e8440b2fded11fc68b2476ad77ba3f1 *R/EventsDetection_BAM.R
94c132f376f3e735bee2f05d12a3fd23 *R/Events_ReClassification.R
0bd195910535cd3d9721e709567160ff *R/FindPrimers.R
8d7c7a82863be5c554ace6fe74f904db *R/Fit.R
350c6f86452ae3bc80c40bacc5690789 *R/GetPSI_FromTranRef.R
416148127b9bdf7854324fe1df096a56 *R/MyPrimers.R
1f93c0951880ac40839f0430b21536b2 *R/MyPrimers_taqman.R
683b3582ddec2e22029edbb0465f2904 *R/PSI_Statistic.R
dc3ae4368bfb66e91d1905ef133abebc *R/PSI_boots.R
51f8d66b552c75a34cf2da8091c9ec3d *R/PSIss.R
9205ea82c70105389f8933837314f0df *R/PrepareBam_EP.R
a03f4639f6379ed3f97f14f1cddd5c9a *R/Protein_Domain_Enrichment.R
cd220c1401cd6fc8ea29a6f9a33958ba *R/ResulTable.R
9f2e255c93e01c35c3d26cd14a42ded2 *R/SF_Prediction.R
62b75ad5fe882827545ed3b3da7d0499 *R/SG_RNASeq.R
b9636b223fa406542c2e5ab680286120 *R/SG_reclassify.R
4b5264e6b7bdbb38e132976abddfd0ab *R/TxD.R
85e20b3ce207de87b96f721e1170c8f7 *R/getPSI_RNASeq_boot.R
1aa7d14621fe006c2a846e6b0f8622d4 *R/getbootstrapdata.R
ca9dfc2ee7877d1456fa233552c518c2 *R/newAuxFunctions.R
7a868d1e1530fd5e7a8d465cb826ab04 *README.md
d98a908ddff71ba68c367ff2a9689c6e *build/vignette.rds
e954671b00770af83ebe37a7aa87f1dd *data/AllEvents_RNASeq.rda
57e0a257cd14552c7c01bfd008de921a *data/AllEvents_RNASeq_MP.rda
67ad8cf194272abe3880860759eab741 *data/ArrayDatamultipath.rda
a1f2bef6e9bc3aa4ec4aefe6544b1084 *data/ArraysData.rda
bb3ea0af25987de870587137c44efd6e *data/EventXtrans.rda
7492dbe0d3cd66e093627280ccaa7ca3 *data/Fit.rda
5f994644bff39651b0ec06de104babd2 *data/MyPrimers.rda
fe92ce4b5ea1e7aa396e5d4bbbbe709e *data/MyPrimers_taqman.rda
a9e61b90aed4a0fe7172bfe2a19f860d *data/PSI_boots.rda
7f31d16e2eedcc87506fb8b1c753ad3f *data/PSIss.rda
9f8c66dd621192771a210d0d2015ac43 *data/SG_RNASeq.rda
99d5c1e6dd2f104ec5a9b1104f52293f *data/SG_reclassify.rda
15062bc9fa1bd0e1262cc7ac7677839c *data/TxD.rda
5e636389fe04ea6cb29adc81c1b4ad44 *inst/CITATION
b8717626fa6a1934be94e59f3dd07d7c *inst/doc/EventPointer.R
c55221c93a54781bb57782c134c427d0 *inst/doc/EventPointer.Rmd
b1910be0a79d98fdd2dd99d055a5bfbc *inst/doc/EventPointer.html
3ac9acf9a45f1da08d193593fcee9f9b *inst/extdata/DONSON.gtf
ee1a801a0d535e9dae65e4af8fe48c5f *inst/extdata/EventsDetection_EPBAM.RData
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711aecec9689161142fabf38002610f5 *inst/extdata/EventsFound_Gencode24_2genes.txt
85641d3af88bbafb9c07ecac41ceea41 *inst/extdata/EventsFound_RNASeq.txt
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6acdd37bd4b1ba809aa6476d042e44ff *inst/extdata/bams/SRR1513329_switched_A5_A3Aligned.sortedByCoord.out_chr3.bam
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092f0f6476d2bf57c3706edc31765d77 *inst/extdata/bams/SRR1513329_switched_SEAligned.sortedByCoord.out_chr3.bam
10a3322a9a26025bb7d03e20acb4382e *inst/extdata/bams/SRR1513329_switched_SEAligned.sortedByCoord.out_chr3.bam.bai
e5993a875ce571498249eb7a7bc30736 *inst/extdata/bams/SRR1513330Aligned.sortedByCoord.out_chr3.bam
290c71c768782e3b3b16e40c91e89b22 *inst/extdata/bams/SRR1513330Aligned.sortedByCoord.out_chr3.bam.bai
50d3ad3ebf7b64c613dd600d072b1472 *inst/extdata/bams/SRR1513330_switched_A5_A3Aligned.sortedByCoord.out_chr3.bam
ca111f3eaa91603471e26444d63f7d7a *inst/extdata/bams/SRR1513330_switched_A5_A3Aligned.sortedByCoord.out_chr3.bam.bai
b9985ef341a12c07a3abf1d2d7f2c664 *inst/extdata/bams/SRR1513330_switched_SEAligned.sortedByCoord.out_chr3.bam
a7b0371f18ad182716515dfa6461dcd0 *inst/extdata/bams/SRR1513330_switched_SEAligned.sortedByCoord.out_chr3.bam.bai
28f80c3af10ec2734d1f5205366edb9f *inst/extdata/bams/SRR1513331Aligned.sortedByCoord.out_chr3.bam
f43f66b4da66987496715728a832746c *inst/extdata/bams/SRR1513331Aligned.sortedByCoord.out_chr3.bam.bai
677856133936aaf6ec420132e1895870 *inst/extdata/bams/SRR1513331_switched_A5_A3Aligned.sortedByCoord.out_chr3.bam
f87ef425fbf5d2b72511c80c6ca99648 *inst/extdata/bams/SRR1513331_switched_A5_A3Aligned.sortedByCoord.out_chr3.bam.bai
7280fb5d3d1c6eef73f60b70985e9787 *inst/extdata/bams/SRR1513331_switched_SEAligned.sortedByCoord.out_chr3.bam
c0dcfc457c5d514fd2b1a45f3a2fcea5 *inst/extdata/bams/SRR1513331_switched_SEAligned.sortedByCoord.out_chr3.bam.bai
8abd2e452150b00b546ded66154a7f55 *inst/extdata/bams/refseq_hg19.formatted.filtered.gtf
e4a3a6a31b08d54d59b41394f1f6be20 *inst/extdata/example_recla_events.gtf
ee5d0f0b738d0240714b3db909f37bb5 *inst/extdata/example_recla_genes.gtf
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fcbed62df71c682873886a309ae80fed *inst/extdata/output/ERR315326/abundance.h5
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a344ac7092db39ee0525362aadd3428b *inst/extdata/output/ERR315494/run_info.json
23ad534a3344f44285477701bc2a04d2 *inst/unitTests/test_AuxFunctions.R
88064e47ecbcab7b38ef82395c458c63 *inst/unitTests/test_CDFfromGTF.R
8da8a8d8ed24fdaf6927daea145ea1c7 *inst/unitTests/test_EventDetection.R
d0366998c578b49ac4d353e208643d2a *inst/unitTests/test_EventDetectionMultipath.R
251c3055f3f7349a9dde517126e9cd7c *inst/unitTests/test_EventDetection_transcriptome.R
194dfa5dc857606a718d855385a030ac *inst/unitTests/test_EventPointer.R
c19e17a2855f1054e9a17ac74be59df2 *inst/unitTests/test_EventPointer_Bootstraps.R
db93944fddb7253c30b9277392a875f4 *inst/unitTests/test_EventPointer_IGV.R
899ab180b4602d3e5f6159cccf3644bb *inst/unitTests/test_EventPointer_RNASeq.R
d8b59526013adbebee3c3a5e8e7110a6 *inst/unitTests/test_EventPointer_RNASeq_IGV.R
4e7bb1489e7dcdf40e35326967459282 *inst/unitTests/test_EventPointer_RNASeq_TranRef.R
34a9e581301f142beb2e682828cebd0b *inst/unitTests/test_EventPointer_RNASeq_TranRef_IGV.R
634b37be7e9be3bd0b0d7ac28f9c644c *inst/unitTests/test_FindPrimers.R
274362055bf4535a7857c422e3d21982 *inst/unitTests/test_GetPSI_FromTranRef.R
5868df9a4ee20c1ce6ec30a5e408e21f *inst/unitTests/test_PSI_Statistic.R
bb2daef7ab68d1535a03cc11f7efb0c4 *inst/unitTests/test_Protein_Domain_Enrichment.R
a630a087f8de27778966c9c310cfb16d *inst/unitTests/test_ResulTable.R
58c25ab38a55793fae3b27e00eace854 *inst/unitTests/test_getbootstrapdata.R
984ad958a4fd38bc237533b9244f2781 *man/AllEvents_RNASeq.Rd
e02e647005335f051a91e2a912f4b255 *man/AllEvents_RNASeq_MP.Rd
a8fcbcd33e0bd7ae7f67b994ca3a0511 *man/ArrayDatamultipath.Rd
3f84c71c46ff7cfce61202ddf1881de3 *man/ArraysData.Rd
0fdd1dbdf46f664d1ed1925aa8437035 *man/CDFfromGTF.Rd
bb1d55b1800d93eb0bc92e8e8cb853bc *man/CDFfromGTF_Multipath.Rd
31c9c29d28e81ee69cea0337881e8e94 *man/CreateExSmatrix.Rd
b6e45c52280911c21fda8dd782f9326f *man/EventDetection.Rd
ce250601ff779b53dbac00ae3ef42da4 *man/EventDetectionAnn.Rd
9601cab7e66a3b424ad0aea734bcba92 *man/EventDetectionMultipath.Rd
1b55db748d9b0863d13e4464309d5982 *man/EventDetection_transcriptome.Rd
8d9e511014dfab8d9fdb8aa8019e29d9 *man/EventPointer.Rd
d3854922aa99f14e2257ff0d972f0d4b *man/EventPointerBAM_IGV.Rd
63d9e1bd959b39f50cf68b06cfd58e7f *man/EventPointerStats_BAM.Rd
2ab83efbb1b62094ca3fdfe83c111161 *man/EventPointer_Bootstraps.Rd
ec36df0cac3b5a80bbf446e9c64e2734 *man/EventPointer_IGV.Rd
45e0918e8f15e7da5f9182c300c6e591 *man/EventPointer_RNASeq.Rd
cfd8710a983bbc35325dd13e551e2265 *man/EventPointer_RNASeq_TranRef.Rd
322648194e115011185a22a198811730 *man/EventPointer_RNASeq_TranRef_IGV.Rd
3048a840814a0afd5cff0ac565f0dcf8 *man/EventXtrans.Rd
7d59d912bec8cedb2303766b954f2c94 *man/EventsDetection_BAM.Rd
f0522cf510aaa531894f325d85f58100 *man/Events_ReClassification.Rd
9e94e42de5e7e08eaf0c52e21fc7fb40 *man/FindPrimers.Rd
b8b34495a1fffeb37943a916e1c33ad9 *man/Fit.Rd
435605e1829c69fd0fcf470da673bd1e *man/GetPSI_FromTranRef.Rd
77feff0900b41302b0d80dc6b5850a8c *man/InternalFunctions.Rd
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cb7286459f013ff3a23fae622b945250 *man/MyPrimers_taqman.Rd
a422c3950a55bebe70c0a98529cc0ecd *man/PSI_Statistic.Rd
a2b46f00cca714847bf6fb5c7d57e237 *man/PSI_boots.Rd
12f1a1da3bf5c77c6bd9b61c80d0467a *man/PSIss.Rd
16231558afc3789637783b14c55dbf44 *man/PrepareBam_EP.Rd
dd6cb61f122c037cdfb1e988a5275118 *man/Protein_Domain_Enrichment.Rd
cc576228d5ffc8129516cce1db0d78c7 *man/ResulTable.Rd
4a3b5b6a2b4d00e74f69d353ff288b58 *man/SF_Prediction.Rd
9f695389038011a76c88075a1c2b5f92 *man/SG_RNASeq.Rd
05eee9c288bdcf263c0570d5e7582f74 *man/SG_reclassify.Rd
e4444f2732c6cbc2196a2a0db42d44c8 *man/TxD.Rd
6e1fae950beba3aa398692e29a426f75 *man/getPSI_RNASeq_boot.Rd
7ada0fdb38d93c0d1aa2744caa68288d *man/getbootstrapdata.Rd
a5089e15125418f4611c0b3e3e95427a *src/dgl.c
8d392a95cbd89de0a7bb9800dd7a3ee4 *src/gldist.h
14be9634983035dbda8374a456354887 *src/params.c
7acbfe0b514022d76a026abf162d0491 *src/pgl.c
bbafed4bc027ae2e687c3eef5bcd2269 *src/qdgl.c
bfb12eba11f029d9a990462511007b51 *src/qgl.c
78a1eb8405112e0eae62f6fc91903239 *src/rgl.c
91c800068684074751e9bc2f893282a2 *tests/runTests.R
985e52135f2c6db0393636837df62614 *vignettes/1_workflowEP.PNG
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dc2d886bcf147080612ed499893515d9 *vignettes/5_ficheros_EPST.drawio.png
db920bcaba974850c426173ca8d80605 *vignettes/EPST_EPBAM.png
3ab6de3c78a6ccc1057135015aaf8843 *vignettes/Esquema_bis.png
c55221c93a54781bb57782c134c427d0 *vignettes/EventPointer.Rmd
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1ab5df682e00d4d1dd961e299b258763 *vignettes/Figure11.png
899acf9338239d478340df1c94a220da *vignettes/Figure2.png
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5efbdbd67336eae2bbf2ac11ed2575d0 *vignettes/Figure5.png
1d70ccad260eace5e2847a81496af7ef *vignettes/Figure6.png
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585291a8d40412fd190efd7e56e43f62 *vignettes/Figure8.png
32863ba577f082e06c33934eb28e2f71 *vignettes/Figure9.png
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30c883ad0ab8039f2d1950f9766c157a *vignettes/Thumbs.db
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94e9898bc31765f07ac15f16f1acfb3e *vignettes/example_4_ri_ce.png
229a8ccf513204f12d7b0778d8e7a187 *vignettes/example_5_ce_alt3.png
