RTCGA.rnaseq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RTCGA.rnaseq.
Rna-seq datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.9
Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.
Author: Marcin Kosinski <m.p.kosinski at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
citation("RTCGA.rnaseq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA.rnaseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.rnaseq")| Using RTCGA to download RNAseq data as included in RTCGA.rnaseq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation Data, ExperimentData |
| Version | 20151101.14.0 |
| License | GPL-2 |
| Depends | R (>= 3.2.0), RTCGA |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/RTCGA/RTCGA/issues |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RTCGA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTCGA.rnaseq_20151101.14.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.rnaseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCGA.rnaseq |
| Package Short Url | https://bioconductor.org/packages/RTCGA.rnaseq/ |
| Package Downloads Report | Download Stats |