RTCGA.CNV
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RTCGA.CNV.
CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.9
Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.
Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
citation("RTCGA.CNV")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA.CNV")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.CNV")| Using RTCGA to download CNV data as included in RTCGA.CNV | HTML | R Script |
| Using RTCGA to estimate ratio of MDM2 duplications | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, ExperimentData |
| Version | 1.12.0 |
| License | GPL-2 |
| Depends | R (>= 3.3.0), RTCGA |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/RTCGA/RTCGA/issues |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RTCGA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTCGA.CNV_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.CNV |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCGA.CNV |
| Package Short Url | https://bioconductor.org/packages/RTCGA.CNV/ |
| Package Downloads Report | Download Stats |