ChIPexoQualExample
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ChIPexoQualExample.
Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data
Bioconductor version: 3.9
Data for the ChIPexoQual package, consisting of (3) chromosome 1 aligned reads from a ChIP-exo experiment for FoxA1 in mouse liver cell lines aligned to the mm9 genome.
Author: Rene Welch, Dongjun Chung, Sunduz Keles
Maintainer: Rene Welch <welch at stat.wisc.edu>
citation("ChIPexoQualExample")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPexoQualExample")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPexoQualExample")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, Genome |
| Version | 1.8.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.3) |
| Imports | |
| System Requirements | |
| URL | http://www.github.com/keleslab/ChIPexoQualExample |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ChIPexoQual |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChIPexoQualExample_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPexoQualExample |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ChIPexoQualExample |
| Package Short Url | https://bioconductor.org/packages/ChIPexoQualExample/ |
| Package Downloads Report | Download Stats |