BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)

Bioconductor version: 3.9

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.4.0
License	Artistic-2.0
Depends	BSgenome(>= 1.33.5)
Imports	BSgenome
System Requirements
URL

Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me	annotation, BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, sequencing, traseR, variants
Imports Me	appreci8R, BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, decompTumor2Sig, MADSEQ, RareVariantVis, RCAS, TCGAWorkflow, trena
Suggests Me	AneuFinder, ArrayTV, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CRISPRseek, customProDB, DNAshapeR, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GUIDEseq, Gviz, h5vc, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, PGA, plyranges, qsea, R453Plus1Toolbox, Rariant, REMP, rGADEM, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, StructuralVariantAnnotation, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, YAPSA
Links To Me

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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