srnadiff
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see srnadiff.
Differential Expression of Small RNA-Seq
Bioconductor version: 3.9
Differential expression of small RNA-seq when reference annotation is not given.
Author: Zytnicki Matthias [aut, cre]
Maintainer: Matthias Zytnicki <matthias.zytnicki at inra.fr>
Citation (from within R, enter
citation("srnadiff")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("srnadiff")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("srnadiff")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, DifferentialExpression, Epigenetics, GeneExpression, ImmunoOncology, Preprocessing, SmallRNA, Software, StatisticalMethod |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | Rcpp (>= 0.12.8), methods, utils, devtools, BiocStyle, S4Vectors, GenomeInfoDb, rtracklayer, SummarizedExperiment, IRanges, GenomicRanges, DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments, ggplot2, BiocParallel |
| System Requirements | C++11 |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | srnadiff_1.4.0.tar.gz |
| Windows Binary | srnadiff_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | srnadiff_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/srnadiff |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/srnadiff |
| Bioc Package Browser | https://code.bioconductor.org/browse/srnadiff/ |
| Package Short Url | https://bioconductor.org/packages/srnadiff/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |