EBSEA
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see EBSEA.
Exon Based Strategy for Expression Analysis of genes
Bioconductor version: 3.9
Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.
Author: Arfa Mehmood, Asta Laiho, Laura L. Elo
Maintainer: Arfa Mehmood <arfa.mehmood at utu.fi>
Citation (from within R, enter
citation("EBSEA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EBSEA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBSEA")| EBSEA: Exon Based Strategy for Expression Analysis of genes | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Sequencing, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-2 |
| Depends | |
| Imports | edgeR, limma, graphics, stats, plyr |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EBSEA_1.12.0.tar.gz |
| Windows Binary | EBSEA_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | EBSEA_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EBSEA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EBSEA |
| Bioc Package Browser | https://code.bioconductor.org/browse/EBSEA/ |
| Package Short Url | https://bioconductor.org/packages/EBSEA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |