treeio
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see treeio.
Base Classes and Functions for Phylogenetic Tree Input and Output
Bioconductor version: 3.6
Base classes and functions for parsing and exporting phylogenetic trees.
Author: Guangchuang Yu [aut, cre], Tommy Tsan-Yuk Lam [aut, ths], Casey Dunn [ctb], Bradley Jones [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
Citation (from within R, enter
citation("treeio")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("treeio")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual | |
NEWS | Text |
Details
biocViews | Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, Software |
Version | 1.2.2 |
In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3.2) |
Imports | ape, ggplot2, jsonlite, magrittr, methods, rvcheck |
System Requirements | |
URL | https://guangchuangyu.github.io/treeio |
Bug Reports | https://github.com/GuangchuangYu/treeio/issues |
See More
Suggests | Biostrings, ggtree(>= 1.7.5), knitr, prettydoc, testthat |
Linking To | |
Enhances | |
Depends On Me | ggtree |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | treeio_1.2.2.tar.gz |
Windows Binary | treeio_1.2.2.zip |
Mac OS X 10.11 (El Capitan) | treeio_1.2.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/treeio |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/treeio |
Package Short Url | https://bioconductor.org/packages/treeio/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |