GenomicDataCommons
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see GenomicDataCommons.
NIH / NCI Genomic Data Commons Access
Bioconductor version: 3.6
Programmatically access the NIH / NCI Genomic Data Commons RESTful service.
Author: Martin Morgan [aut], Davis Sean [aut, cre]
Maintainer: Davis Sean <sdavis2 at mail.nih.gov>
Citation (from within R, enter
citation("GenomicDataCommons")
):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | DataImport, Sequencing, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0), magrittr |
Imports | stats, httr, xml2, jsonlite, utils, lazyeval, readr, data.table, GenomicRanges, IRanges |
System Requirements | |
URL | https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons |
Bug Reports | https://github.com/Bioconductor/GenomicDataCommons/issues/new |
See More
Suggests | BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GenomicDataCommons_1.2.0.tar.gz |
Windows Binary | GenomicDataCommons_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | GenomicDataCommons_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomicDataCommons |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicDataCommons |
Package Short Url | https://bioconductor.org/packages/GenomicDataCommons/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |