To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("uSORT")
In most cases, you don't need to download the package archive at all.
uSORT
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see uSORT.
uSORT: A self-refining ordering pipeline for gene selection
Bioconductor version: 3.4
This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.
Author: Mai Chan Lau, Hao Chen, Jinmiao Chen
Maintainer: Hao Chen <chen_hao at immunol.a-star.edu.sg>
Citation (from within R,
enter citation("uSORT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("uSORT")
Documentation
| HTML | R Script | Quick Start |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBiology, DNASeq, GUI, RNASeq, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), tcltk |
| Imports | igraph, Matrix, RANN, RSpectra, VGAM, gplots, parallel, plyr, methods, cluster, Biobase, fpc, BiocGenerics, monocle, grDevices, graphics, stats, utils |
| LinkingTo | |
| Suggests | knitr, RUnit, testthat, ggplot2 |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | uSORT_1.0.0.tar.gz |
| Windows Binary | uSORT_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | uSORT_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/uSORT/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/uSORT/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
