To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("dSimer")
In most cases, you don't need to download the package archive at all.
dSimer
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see dSimer.
Integration of Disease Similarity Methods
Bioconductor version: 3.4
dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.
Author: Min Li <limin at mail.csu.edu.cn>, Peng Ni <nipeng at csu.edu.cn> with contributions from Zhihui Fei and Ping Huang.
Maintainer: Peng Ni <nipeng at csu.edu.cn>
Citation (from within R,
enter citation("dSimer")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("dSimer")
Documentation
| HTML | R Script | Integration of Disease Similarity Methods |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Network, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0), igraph (>= 1.0.1) |
| Imports | stats, Rcpp (>= 0.11.3), ggplot2, reshape2, GO.db, org.Hs.eg.db, AnnotationDbi, graphics |
| LinkingTo | Rcpp |
| Suggests | knitr, rmarkdown, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | dSimer_1.0.0.tar.gz |
| Windows Binary | dSimer_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | dSimer_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/dSimer/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/dSimer/ |
| Package Downloads Report | Download Stats |
Documentation »
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