- Home
- Bioconductor 3.4
- Software Packages
- OperaMate
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")
In most cases, you don't need to download the package archive at all.
OperaMate
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see OperaMate.
An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
Bioconductor version: 3.4
OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.
Author: Chenglin Liu
Maintainer: Chenglin Liu <cliu at sjtu.edu.cn>
Citation (from within R,
enter citation("OperaMate")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OperaMate")
| R Script | An introduction to OperaMate | |
| OperaMate-manual.pdf | ||
| Reference Manual |
Details
| biocViews | CellBasedAssays, Normalization, Preprocessing, QualityControl, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.2.0), stats, methods, grDevices |
| Imports | pheatmap, grid, ggplot2, fBasics, gProfileR, gridExtra, reshape2, stabledist |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OperaMate_1.6.0.tar.gz |
| Windows Binary | OperaMate_1.6.0.zip |
| Mac OS X 10.9 (Mavericks) | OperaMate_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OperaMate/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/OperaMate/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
