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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CancerSubtypes")
In most cases, you don't need to download the package archive at all.
CancerSubtypes
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see CancerSubtypes.
Cancer subtypes identification, validation and visualization based on genomic data
Bioconductor version: 3.4
CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based on the genomic datasets.
Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>
Maintainer: Taosheng Xu<taosheng.x at gmail.com>
Citation (from within R,
enter citation("CancerSubtypes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CancerSubtypes")
Documentation
| HTML | R Script | CancerSubtypes |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, GeneExpression, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3), sigclust, NMF |
| Imports | SNFtool, iCluster, survival, cluster, impute, limma, ConsensusClusterPlus, grDevices |
| LinkingTo | |
| Suggests | BiocGenerics, knitr, RTCGA.mRNA, RTCGA.clinical |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CancerSubtypes_1.0.0.tar.gz |
| Windows Binary | CancerSubtypes_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | CancerSubtypes_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CancerSubtypes/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/CancerSubtypes/ |
| Package Downloads Report | Download Stats |
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