To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCOBRA")
In most cases, you don't need to download the package archive at all.
iCOBRA
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.
Comparison and Visualization of Ranking and Assignment Methods
Bioconductor version: 3.3
This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.
Author: Charlotte Soneson [aut, cre]
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
Citation (from within R,
enter citation("iCOBRA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iCOBRA")
Documentation
| HTML | R Script | iCOBRA User Guide |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL (>=2) |
| Depends | R (>= 3.2) |
| Imports | shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2, scales, ROCR, dplyr, DT, limma, methods, UpSetR |
| LinkingTo | |
| Suggests | knitr, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | iCOBRA_1.0.2.tar.gz |
| Windows Binary | iCOBRA_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | iCOBRA_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/iCOBRA/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/iCOBRA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
