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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BasicSTARRseq")
In most cases, you don't need to download the package archive at all.
BasicSTARRseq
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see BasicSTARRseq.
Basic peak calling on STARR-seq data
Bioconductor version: 3.3
Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.
Author: Annika Buerger
Maintainer: Annika Buerger <annika.buerger at ukmuenster.de>
Citation (from within R,
enter citation("BasicSTARRseq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BasicSTARRseq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BasicSTARRseq")
| R Script | BasicSTARRseq.pdf | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | LGPL-3 |
| Depends | GenomicRanges, GenomicAlignments |
| Imports | S4Vectors, methods, IRanges, GenomeInfoDb, stats |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | BasicSTARRseq_1.0.2.tar.gz |
| Windows Binary | BasicSTARRseq_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | BasicSTARRseq_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/BasicSTARRseq/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/BasicSTARRseq/ |
| Package Downloads Report | Download Stats |
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