bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
a59d7a77001a80483d028cb0f3d01369 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
9da9826b6ca1027ee9f2aa59edf16cbc *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
0a417073ec16b745732085bff61c8a3c *Meta/hsearch.rds
0098e33182e97f4975f0e22720d674a3 *Meta/links.rds
c01f5c799eb38631b86fe18fefcfe366 *Meta/nsInfo.rds
6395464a57e838307c072eaa2e2c47ab *Meta/package.rds
cef5c1e2744c475783788936272fd4ed *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
c81905d4a08d014e2d2103b55c974dae *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
96f6d9bc9f13385e1451e87c7ccea09a *R/GenomicAlignments.rdb
6d1a833055e5d638c0802f8a4ee53076 *R/GenomicAlignments.rdx
e099f894c81b0cb14abf1dd95d6e6edc *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
87469c8866948ad43f2e0f8a0f5787da *doc/GenomicAlignmentsIntroduction.pdf
e67d3665e733ff5e39e4bfca86f02556 *doc/OverlapEncodings.R
68888481e2bba183e3408e111907d416 *doc/OverlapEncodings.Rnw
a1423f39a3f5d05a77351bf31d8aba9a *doc/OverlapEncodings.pdf
ce6b7e63648a74109c4e351265c9eb26 *doc/WorkingWithAlignedNucleotides.R
5e284095ceea6b18ee2bb1a59c19b8f4 *doc/WorkingWithAlignedNucleotides.Rmd
37cf5ad111acf337c9ed942ca27a31fb *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
459876f6a6baca934fcf6c9af7a5b17e *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
157952f856fc209d888a52d34ca6c91a *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
a620a32f4dda3c63e36489c88544be62 *help/GenomicAlignments.rdb
05c84be2c96debdf583ce80abd3c3fa9 *help/GenomicAlignments.rdx
16bef17ed2d1d2b505b16909073dc406 *help/aliases.rds
6df06d52deffe239aa8a0854b62a923c *help/paths.rds
437bf6ebcd0e15452f33efa4e2c94d03 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
a04a97086a75b084902aa3a8641c025a *libs/x64/GenomicAlignments.dll
c69c8cccc9e735c1087f3b593f50a25e *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
