. This package serves as example data for metabolomics analysis and teaching purposes." /> Bioconductor - nmrdata (development version)

Bioconductor release scheduled for October 29

nmrdata

This is the development version of nmrdata; to use it, please install the devel version of Bioconductor.

Example 1d NMR Data for Metabolic Profiling


Bioconductor version: Development (3.22)

Provides example one-dimensional proton NMR spectra of murine urine samples collected before and after bariatric or sham surgery (Roux-en-Y gastric bypass). The data are adapted from Jia V Li et al. (2011), "Metabolic surgery profoundly influences gut microbial-host metabolic cross-talk", Gut, 60(9), 1214–1223. . This package serves as example data for metabolomics analysis and teaching purposes.

Author: Torben Kimhofer [aut, cre] ORCID iD ORCID: 0000-0001-7158-9930

Maintainer: Torben Kimhofer <tkimhofer at gmail.com>

Citation (from within R, enter citation("nmrdata")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nmrdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nmrdata")
nmrdata: Example 1D Proton NMR Data HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub
Version 0.99.2
License MIT + file LICENSE
Depends
Imports ExperimentHub
System Requirements
URL https://github.com/tkimhofer/nmrdata
Bug Reports https://github.com/tkimhofer/nmrdata/issues
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Suggests BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nmrdata_0.99.2.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/nmrdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nmrdata
Package Short Url https://bioconductor.org/packages/nmrdata/
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