rGenomeTracks
This is the development version of rGenomeTracks; for the stable release version, see rGenomeTracks.
Integerated visualization of epigenomic data
Bioconductor version: Development (3.22)
rGenomeTracks package leverages the power of pyGenomeTracks software with the interactivity of R. pyGenomeTracks is a python software that offers robust method for visualizing epigenetic data files like narrowPeak, Hic matrix, TADs and arcs, however though, here is no way currently to use it within R interactive session. rGenomeTracks wrapped the whole functionality of pyGenomeTracks with additional utilites to make to more pleasant for R users.
Author: Omar Elashkar [aut, cre]
Maintainer: Omar Elashkar <omar.i.elashkar at gmail.com>
citation("rGenomeTracks")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rGenomeTracks")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rGenomeTracks")| rGenomeTracks | HTML | R Script |
| Reference Manual |
Details
| biocViews | HiC, Software, Visualization |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (4 years) |
| License | GPL-3 |
| Depends | R (>= 4.1.0) |
| Imports | imager, reticulate, methods, rGenomeTracksData |
| System Requirements | pyGenomeTracks (prefered to use install_pyGenomeTracks()) |
| URL |
See More
| Suggests | rmarkdown, knitr, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rGenomeTracks_1.15.0.tar.gz |
| Windows Binary (x86_64) | rGenomeTracks_1.15.0.zip |
| macOS Binary (x86_64) | rGenomeTracks_1.15.0.tgz |
| macOS Binary (arm64) | rGenomeTracks_1.15.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rGenomeTracks |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rGenomeTracks |
| Bioc Package Browser | https://code.bioconductor.org/browse/rGenomeTracks/ |
| Package Short Url | https://bioconductor.org/packages/rGenomeTracks/ |
| Package Downloads Report | Download Stats |