Package: SingleCellSignalR
Title: Cell Signalling Using Single-Cell RNA-seq or Proteomics Data
Version: 2.0.1
Authors@R: c(
    person("Jacques","Colinge",email="jacques.colinge@inserm.fr",role="aut",comment = c(ORCID = "0000-0003-2466-4824")),
    person("Jean-Philippe","Villemin",email="jpvillemin@gmail.com",role="cre",comment = c(ORCID = "0000-0002-1838-5880")))
Description: Inference of ligand-receptor (L-R) interactions from
        single-cell expression (transcriptomics/proteomics) data.
        SingleCellSignalR v2 inferences rely on the statistical model
        we introduced in the BulkSignalR package as well as the
        original SingleCellSignalR LR-score (both are available).
        SingleCellSignalR v2 can be regarded as a wrapper to
        BulkSignalR fundamental classes. This also enables v2 users to
        work with any species, whereas only Mus musculus & Homo sapiens
        were available before in SingleCellSignalR v1.
URL: https://github.com/jcolinge/SingleCellSignalR
BugReports: https://github.com/jcolinge/SingleCellSignalR/issues
License: CeCILL | file LICENSE
Depends: R (>= 4.4)
Encoding: UTF-8
LazyData: FALSE
biocViews: Network, RNASeq, Software, Proteomics, Transcriptomics
        ,SingleCell, NetworkInference
Imports: stats, utils, methods, ggplot2, matrixTests, matrixStats,
        foreach, BulkSignalR
Suggests: knitr, markdown, rmarkdown
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libxml2-dev libssl-dev perl libx11-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-11-08 17:15:08 UTC
RemoteUrl: https://github.com/bioc/SingleCellSignalR
RemoteRef: RELEASE_3_22
RemoteSha: 516a2011009530ce7d2d6284c7bde100cdd1fbe2
NeedsCompilation: no
Packaged: 2025-11-11 17:40:31 UTC; root
Author: Jacques Colinge [aut] (ORCID: <https://orcid.org/0000-0003-2466-4824>),
  Jean-Philippe Villemin [cre] (ORCID:
    <https://orcid.org/0000-0002-1838-5880>)
Maintainer: Jean-Philippe Villemin <jpvillemin@gmail.com>
Built: R 4.5.2; ; 2025-11-11 17:42:58 UTC; windows
