Package: SIMD
Type: Package
Title: Statistical Inferences with MeDIP-seq Data (SIMD) to infer the
        methylation level for each CpG site
Version: 1.28.0
Author: Yan Zhou
Maintainer: Jiadi Zhu <2160090406@email.szu.edu.cn>
Description: This package provides a inferential analysis method for
        detecting differentially expressed CpG sites in MeDIP-seq data.
        It uses statistical framework and EM algorithm, to identify
        differentially expressed CpG sites. The methods on this package
        are described in the article 'Methylation-level Inferences and
        Detection of Differential Methylation with Medip-seq Data' by
        Yan Zhou, Jiadi Zhu, Mingtao Zhao, Baoxue Zhang, Chunfu Jiang
        and Xiyan Yang (2018, pending publication).
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
Imports: edgeR, statmod, methylMnM, stats, utils
Suggests: BiocStyle, knitr,rmarkdown
biocViews: ImmunoOncology, DifferentialMethylation,SingleCell,
        DifferentialExpression
VignetteBuilder: knitr
RoxygenNote: 6.0.1
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:47:35 UTC
RemoteUrl: https://github.com/bioc/SIMD
RemoteRef: RELEASE_3_22
RemoteSha: 0910665193378ae67c710b9e360e7de77c39785e
NeedsCompilation: yes
Packaged: 2025-11-11 17:35:28 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 17:37:06 UTC; windows
Archs: x64
