# Signature discovery from omics data

## Documentation for package ‘biosigner’ version 1.36.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

biosigner-package | Molecular signature discovery from omics data
biosign | Builds the molecular signature.
biosign,MultiDataSet_method | Builds the molecular signature.
biosign-class | Class "biosign"
biosign-method | Builds the molecular signature.
biosign-method | getEset method
biosigner | Molecular signature discovery from omics data
biosignMultiDataSet-class | Class "biosignMultiDataSet"
biosignMultiDataSet-method | getMset method
diaplasma | Analysis of plasma from diabetic patients by LC-HRMS
getAccuracyMN | Accuracies of the full model and the models restricted to the signatures
getAccuracyMN-method | Accuracies of the full model and the models restricted to the signatures
getBiosign | Getting the biosigner signature from the SummarizedExperiment object
getBiosign-method | Getting the biosigner signature from the SummarizedExperiment object
getEset | getEset method
getEset, | getEset method
getEset-method | getEset method
getMset | getMset method
getMset, | getMset method
getMset-method | getMset method
getSignatureLs | Signatures selected by the models
getSignatureLs-method | Signatures selected by the models
plot-method | Plot method for 'biosign' signature objects
plot.biosign | Plot method for 'biosign' signature objects
plot.biosignMultiDataSet | Plot method for 'biosign' signature objects
predict-method | Predict method for 'biosign' signature objects
predict.biosign | Predict method for 'biosign' signature objects
show-method | Show method for 'biosign' signature objects
show.biosign | Show method for 'biosign' signature objects
SpikedPos | Spike-in metabolomics data for apple extracts (from the BioMark package)