Bioconductor version: 3.2
| Package | Maintainer | Title | 
|---|---|---|
| ABAData | Steffi Grote | Averaged gene expression in human brain regions from Allen Brain Atlas | 
| affycompData | Harris Jaffee | affycomp data | 
| affydata | Harris Jaffee | Affymetrix Data for Demonstration Purpose | 
| Affyhgu133A2Expr | Zhicheng Ji | Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package | 
| Affyhgu133aExpr | Zhicheng Ji | Affymetrix Human hgu133a Array (GPL96) Expression Data Package | 
| Affyhgu133Plus2Expr | Zhicheng Ji | Affyhgu133Plus2Expr (GPL570) Expression Data Package | 
| AffymetrixDataTestFiles | Henrik Bengtsson | Affymetrix data files (CEL, CDF, CHP, EXP, PGF, PSI) for testing | 
| Affymoe4302Expr | Zhicheng Ji | Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package | 
| airway | Michael Love | RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 | 
| ALL | Robert Gentleman | A data package | 
| ALLMLL | B. M. Bolstad | A subset of arrays from a large acute lymphoblastic leukemia (ALL) study | 
| AmpAffyExample | Rafael A. Irizarry | Example of Amplified Data | 
| antiProfilesData | Hector Corrada Bravo | Normal colon and cancer preprocessed affy data for antiProfile building. | 
| ARRmData | Jean-Philippe Fortin | Example dataset for normalization of Illumina 450k Methylation data | 
| AshkenazimSonChr21 | Who to complain to | Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample | 
| bcellViper | Mariano Javier Alvarez | Human B-cell transcriptional interactome and normal human B-cell expression data | 
| beadarrayExampleData | Mark Dunning | Example data for the beadarray package | 
| BeadArrayUseCases | Mike Smith | Analysing Illumina BeadArray expression data using Bioconductor | 
| beta7 | Jean Yang | Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7. | 
| bladderbatch | Jeffrey T. Leek | Bladder gene expression data illustrating batch effects | 
| blimaTestingData | Vojtech Kulvait | Data for testing of the package blima. | 
| breastCancerMAINZ | Markus Schroeder, Benjamin Haibe-Kains | Gene expression dataset published by Schmidt et al. [2008] (MAINZ). | 
| breastCancerNKI | Markus Schroeder, Benjamin Haibe-Kains | Genexpression dataset published by van't Veer et al. [2002] and van de Vijver et al. [2002] (NKI). | 
| breastCancerTRANSBIG | Markus Schroeder, Benjamin Haibe-Kains | Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG). | 
| breastCancerUNT | Markus Schroeder, Benjamin Haibe-Kains | Gene expression dataset published by Sotiriou et al. [2007] (UNT). | 
| breastCancerUPP | Markus Schroeder, Benjamin Haibe-Kains | Gene expression dataset published by Miller et al. [2005] (UPP). | 
| breastCancerVDX | Markus Schroeder, Benjamin Haibe-Kains | Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX). | 
| bronchialIL13 | Vince Carey | time course experiment involving il13 | 
| bsseqData | Kasper Daniel Hansen | Example whole genome bisulfite data for the bsseq package | 
| cancerdata | Daniel Kosztyla | Development and validation of diagnostic tests from high-dimensional molecular data: Datasets | 
| CardinalWorkflows | Kyle D. Bemis | Datasets and workflows for the Cardinal mass spectrometry imaging package | 
| CCl4 | Audrey Kauffmann | Carbon Tetrachloride (CCl4) treated hepatocytes | 
| ccTutorial | Joern Toedling | Data package for ChIP-chip tutorial | 
| ceu1kg | VJ Carey | CEU (N=60) genotypes from 1000 genomes pilot phase I | 
| ceu1kgv | VJ Carey | expression + genotype on 79 unrelated CEU individuals | 
| ceuhm3 | VJ Carey | ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort | 
| cgdv17 | VJ Carey | Complete Genomics Diversity Panel, chr17 on 46 individuals | 
| ChAMPdata | Tiffany Morris | Data Packages for ChAMP package | 
| charmData | Martin Aryee | An example dataset for use with the charm package | 
| cheung2010 | Vince Carey | resources for genetics of gene expression based on Cheung et al 2010 | 
| ChimpHumanBrainData | Sean Davis | Chimp and human brain data package | 
| chipenrich.data | Ryan P. Welch, Chee Lee, Raymond G. Cavalcante | Gene set enrichment analysis for ChIP-seq data | 
| ChIPXpressData | George Wu | ChIPXpress Pre-built Databases | 
| CLL | Robert Gentleman | A Package for CLL Gene Expression Data | 
| cMap2data | J. Saez-Rodriguez | Connectivity Map (version 2) Data | 
| cnvGSAdata | Joseph Lugo | Data used in the vignette of the cnvGSA package | 
| COHCAPanno | Charles Warden | Annotations for City of Hope CpG Island Analysis Pipeline | 
| colonCA | W Sylvia Merk | exprSet for Alon et al. (1999) colon cancer data | 
| ConnectivityMap | Paul Shannon | Functional connections between drugs, genes and diseases as revealed by common gene-expression changes | 
| COPDSexualDimorphism.data | J Fah Sathirapongsasuti | Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation. | 
| CopyhelpeR | Thomas Kuilman | Helper files for CopywriteR | 
| CopyNumber450kData | Simon Papillon-Cavanagh | Example data for the Illumina Methylation 450k array | 
| COSMIC.67 | Julian Gehring | COSMIC.67 | 
| CRCL18 | Claudio Isella | CRC cell line dataset | 
| curatedBladderData | Markus Riester | Bladder Cancer Gene Expression Analysis | 
| curatedBreastData | Katie Planey | Curated breast gene expression data with survival and treatment information | 
| curatedCRCData | Princy Parsana | Colorectal Cancer Gene Expression Analysis | 
| curatedOvarianData | Levi Waldron | Clinically Annotated Data for the Ovarian Cancer Transcriptome | 
| davidTiling | Wolfgang Huber | Data and analysis scripts for David, Huber et al. yeast tiling array paper | 
| derfinderData | Leonardo Collado-Torres | Processed BigWigs from BrainSpan for examples | 
| DeSousa2013 | Xin Wang | Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion | 
| diggitdata | Mariano Javier Alvarez | Example data for the diggit package | 
| DLBCL | Marcus Dittrich | Diffuse large B-cell lymphoma expression data | 
| DmelSGI | Bernd Fischer | Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell" | 
| DMRcatedata | Tim Peters | Data Package for DMRcate package | 
| DonaPLLP2013 | Joseph D. Barry | Supplementary data package for Dona et al. (2013) containing example images and tables | 
| DREAM4 | Paul Shannon | Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge | 
| dressCheck | Vincent Carey | data and software for checking Dressman JCO 25(5) 2007 | 
| DrugVsDiseasedata | J. Saez-Rodriguez | Drug versus Disease Data | 
| dsQTL | VJ Carey | dsQTL, data excerpt from Degner et al. 2012 Nature letter | 
| DvDdata | J. Saez-Rodriguez | Drug versus Disease Data | 
| dyebiasexamples | Philip Lijnzaad | Example data for the dyebias package, which implements the GASSCO method. | 
| EatonEtAlChIPseq | Patrick Aboyoun | ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010 | 
| ecoliLeucine | Laurent Gautier | Experimental data with Affymetrix E. coli chips | 
| ELMER.data | Lijing Yao | Data for the ELMER package | 
| encoDnaseI | VJ Carey | data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity | 
| estrogen | R. Gentleman | 2x2 factorial design exercise for the Bioconductor short course | 
| faahKO | Colin A. Smith | Saghatelian et al. (2004) FAAH knockout LC/MS data | 
| fabiaData | Sepp Hochreiter | Data sets for FABIA (Factor Analysis for Bicluster Acquisition) | 
| facopy.annot | David Mosen-Ansorena | Annotation for the copy number alteration association and enrichment analyses with facopy | 
| facsDorit | Florian Hahne | DKFZ FACS example data | 
| FANTOM3and4CAGE | Vanja Haberle | CAGE data from FANTOM3 and FANTOM4 projects | 
| ffpeExampleData | Levi Waldron | Illumina DASL example microarray data | 
| fibroEset | Sylvia Merk | exprSet for Karaman et al. (2003) fibroblasts data | 
| fission | Michael Love | RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014. | 
| Fletcher2013a | Mauro Castro | Gene expression data from breast cancer cells under FGFR2 signalling perturbation. | 
| Fletcher2013b | Mauro Castro | Master regulators of FGFR2 signalling and breast cancer risk. | 
| flowFitExampleData | Davide Rambaldi | Example data for the flowFit package | 
| FlowSorted.Blood.450k | Andrew E Jaffe | Illumina HumanMethylation data on sorted blood cell populations | 
| FlowSorted.DLPFC.450k | Andrew E Jaffe | Illumina HumanMethylation data on sorted frontal cortex cell populations | 
| flowWorkspaceData | Mike Jiang | A data package containing two flowJo xml workspaces and associated fcs files for testing the flowWorkspace and openCyto packages. | 
| frmaExampleData | Matthew N. McCall | Frma Example Data | 
| FunciSNP.data | Simon G. Coetzee | Various data sets for use with the FunciSNP package | 
| gageData | Weijun Luo | Auxillary data for gage package | 
| gaschYHS | Vince Carey | ExpressionSet for response of yeast to heat shock and other environmental stresses | 
| gatingMLData | J. Spidlen | Data and XML files for Gating-ML Test suite | 
| gcspikelite | Mark Robinson | Spike-in data for GC/MS data and methods within flagme | 
| geneLenDataBase | Nadia Davidson | Lengths of mRNA transcripts for a number of genomes | 
| genomationData | Vedran Franke | Experimental data for showing functionalities of the genomation package | 
| geuvPack | VJ Carey | summarized experiment with expression data from GEUVADIS | 
| geuvStore | VJ Carey | demonstrate storage discipline for eQTL enumerations | 
| GGdata | VJ Carey | all 90 hapmap CEU samples, 47K expression, 4mm SNP | 
| ggtut | VJ Carey | support for tutorial on genetics of gene expression ISMB 2011 | 
| golubEsets | Vince Carey | exprSets for golub leukemia data | 
| grndata | Pau Bellot | Synthetic Expression Data for Gene Regulatory Network Inference | 
| GSBenchMark | Bahman Afsari | Gene Set Benchmark | 
| gskb | Valerie Bares | Gene Set data for pathway analysis in mouse | 
| GSVAdata | Robert Castelo | Data employed in the vignette of the GSVA package | 
| GWASdata | Stephanie Gogarten, Adrienne Stilp | Data used in the examples and vignettes of the GWASTools package | 
| h5vcData | Paul Theodor Pyl | Example data for the h5vc package | 
| hapmap100khind | Benilton Carvalho | Sample data - Hapmap 100K HIND Affymetrix | 
| hapmap100kxba | Benilton Carvalho | Sample data - Hapmap 100K XBA Affymetrix | 
| hapmap500knsp | Benilton Carvalho | Sample data - Hapmap 500K NSP Affymetrix | 
| hapmap500ksty | Benilton Carvalho | Sample data - Hapmap 500K STY Affymetrix | 
| hapmapsnp5 | Benilton Carvalho | Sample data - Hapmap SNP 5.0 Affymetrix | 
| hapmapsnp6 | Benilton Carvalho | Sample data - Hapmap SNP 6.0 Affymetrix | 
| harbChIP | VJ Carey | Experimental Data Package: harbChIP | 
| HD2013SGI | Bernd Fischer | Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping | 
| healthyFlowData | Ariful Azad | Healthy dataset used by the flowMatch package | 
| HEEBOdata | Agnes Paquet | HEEBO set and HEEBO controls. | 
| hgu133abarcodevecs | Matthew N. McCall | hgu133a data for barcode | 
| hgu133plus2barcodevecs | Matthew N. McCall | hgu133plus2 data for barcode | 
| hgu2beta7 | Bioconductor Package Maintainer | A data package containing annotation data for hgu2beta7 | 
| HiCDataHumanIMR90 | Nicolas Servant | Human IMR90 Fibroblast HiC data from Dixon et al. 2012 | 
| HiCDataLymphoblast | Borbala Mifsud | Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009 | 
| Hiiragi2013 | Andrzej Oles | Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages | 
| HIVcDNAvantWout03 | Chris Fraley | T cell line infections with HIV-1 LAI (BRU) | 
| hmyriB36 | Vincent Carey | YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes | 
| HSMMSingleCell | Cole Trapnell | Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) | 
| humanStemCell | R. Gentleman | Human Stem Cells time course experiment | 
| Illumina450ProbeVariants.db | Tiffany Morris | Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes | 
| IlluminaDataTestFiles | Kasper Daniel Hansen | Illumina microarray files (IDAT) for testing | 
| ind1KG | VJ Carey | Data from 1000 Genomes, NA19240 (female) chr6 excerpt | 
| iontreeData | Mingshu Cao | Data provided to show the usage of functions in iontree package | 
| ITALICSData | Guillem Rigaill | ITALICSData | 
| Iyer517 | Vince Carey | exprSets for Iyer, Eisen et all 1999 Science paper | 
| JASPAR2014 | Ge Tan | Data package for JASPAR | 
| KEGGandMetacoreDzPathwaysGEO | Gaurav Bhatti | Disease Datasets from GEO | 
| KEGGdzPathwaysGEO | Gaurav Bhatti | KEGG Disease Datasets from GEO | 
| kidpack | Wolfgang Huber | DKFZ kidney package | 
| leeBamViews | VJ Carey | leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009 | 
| leukemiasEset | Sara Aibar | Leukemia's microarray gene expression data (expressionSet). | 
| LiebermanAidenHiC2009 | Felix Klein | Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009) | 
| ListerEtAlBSseq | Kamal Kishore | BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009 | 
| lumiBarnes | Pan Du | Barnes Benchmark Illumina Tissues Titration Data | 
| LungCancerACvsSCCGEO | Adi Laurentiu Tarca | A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files. | 
| LungCancerLines | Cory Barr | Reads from Two Lung Cancer Cell Lines | 
| lungExpression | Robert Scharpf | ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper | 
| mammaPrintData | Luigi Marchionni | RGLists from the Glas and Buyse breast cancer studies | 
| mAPKLData | Argiris Sakellariou | Gene expression data for testing of the package mAPKL. | 
| maqcExpression4plex | Benilton Carvalho | Sample Expression Data - MAQC / HG18 - NimbleGen | 
| MAQCsubset | VJ Carey | Experimental Data Package: MAQCsubset | 
| MAQCsubsetAFX | Laurent Gatto | MAQC data subset for the Affymetrix platform | 
| MAQCsubsetILM | Laurent Gatto | MAQC data subset for the Illumina platform | 
| MEALData | Ruiz Carlos | Example data of MEAL package | 
| MEDIPSData | Lukas Chavez | Example data for the MEDIPS package. | 
| MEEBOdata | Agnes Paquet | MEEBO set and MEEBO controls. | 
| metaMSdata | Ron Wehrens | Example CDF data for the metaMS package | 
| MethylAidData | M. van Iterson | MethylAid-summarized data on 2800 Illumina 450k array samples | 
| minfiData | Kasper Daniel Hansen | Example data for the Illumina Methylation 450k array | 
| minionSummaryData | Mike Smith | Summarised MinION sequencing data published by Ashton et al. 2015 | 
| miRcompData | Matthew N. McCall | Data used in the miRcomp package | 
| miRNATarget | Y-h. Taguchi | gene target tabale of miRNA for human/mouse used for MiRaGE package | 
| mitoODEdata | Gregoire Pau | Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted). | 
| MMDiffBamSubset | Gabriele Schweikert | Example ChIP-Seq data for the MMDiff package | 
| mosaicsExample | Dongjun Chung | Example data for the mosaics package, which implements MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data | 
| mouse4302barcodevecs | Matthew N. McCall | mouse4302 data for barcode | 
| MSBdata | Wolfgang Huber | Data sets for the book 'Modern Statistics for Biology' | 
| msd16s | Joseph N. Paulson | Healthy and moderate to severe diarrhea 16S expression data | 
| msdata | Steffen Neumann | Various Mass Spectrometry raw data example files | 
| mtbls2 | Steffen Neumann | MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004) | 
| MUGAExampleData | Daniel Gatti | Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping. | 
| Mulder2012 | Xin Wang | Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens | 
| mvoutData | VJ Carey | affy and illumina raw data for assessing outlier detector performance | 
| NCIgraphData | Laurent Jacob | Data for the NCIgraph software package | 
| Neve2006 | VJ Carey | expression and CGH data on breast cancer cell lines | 
| NGScopyData | Xiaobei Zhao | Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package | 
| parathyroidSE | Michael Love | RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012. | 
| pasilla | Alejandro Reyes | Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. | 
| pasillaBamSubset | H. Pages | Subset of BAM files from "Pasilla" experiment | 
| PathNetData | Jason B. Smith | Experimental data for the PathNet package | 
| pcaGoPromoter.Hs.hg19 | Morten Hansen, | pcaGoPromoter.Hs.hg19 is a data package used by pcaGoPromoter | 
| pcaGoPromoter.Mm.mm9 | Morten Hansen, | pcaGoPromoter.Mm.mm9 is a data package used by pcaGoPromoter | 
| pcaGoPromoter.Rn.rn4 | Morten Hansen, | pcaGoPromoter.Rn.rn4 is a data package used by pcaGoPromoter | 
| pd.atdschip.tiling | Kristof De Beuf | Platform Design Info for Affymetrix Atdschip_tiling | 
| pepDat | Renan Sauteraud | Peptide microarray data package | 
| ppiData | Bioconductor Package Maintainer | A package that contains the bait to prey directed graphs for protein-protein interactions. | 
| prebsdata | Karolis Uziela | Data for 'prebs' package | 
| PREDAsampledata | Francesco Ferrari | expression and copy number data on clear cell renal carcinoma samples | 
| ProData | Xiaochun Li | SELDI-TOF data of Breast cancer samples | 
| pRolocdata | Laurent Gatto | Data accompanying the pRoloc package | 
| pumadata | Richard Pearson | Various data sets for use with the puma package | 
| PWMEnrich.Dmelanogaster.background | Robert Stojnic | D. melanogaster background for PWMEnrich | 
| PWMEnrich.Hsapiens.background | Robert Stojnic | H. sapiens background for PWMEnrich | 
| PWMEnrich.Mmusculus.background | Robert Stojnic | M. musculus background for PWMEnrich | 
| QDNAseq.hg19 | Daoud Sie | QDNAseq bin annotation for hg19 | 
| QDNAseq.mm10 | Daoud Sie | Bin annotation mm10 | 
| rcellminerData | Augustin Luna, Vinodh Rajapakse | rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines | 
| RforProteomics | Laurent Gatto | Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication | 
| rheumaticConditionWOLLBOLD | Alejandro Quiroz-Zarate | Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD). | 
| RIPSeekerData | Alejandro Reyes | test data for RIPSeeker | 
| RMassBankData | Michael Stravs, Emma Schymanski | Test dataset for RMassBank | 
| RNAinteractMAPK | Bernd Fischer | Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi | 
| RNAseqData.HNRNPC.bam.chr14 | H. Pages | Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells | 
| RnaSeqSampleSizeData | Shilin Zhao | RnaSeqSampleSizeData | 
| RnaSeqTutorial | Nicolas Delhomme | RNA-Seq Tutorial (EBI Cambridge UK, October 2011) | 
| RnBeads.hg19 | RnBeadsAnnotationCreator | RnBeads.hg19 | 
| RnBeads.hg38 | RnBeadsAnnotationCreator | RnBeads.hg38 | 
| RnBeads.mm10 | RnBeadsAnnotationCreator | RnBeads.mm10 | 
| RnBeads.mm9 | RnBeadsAnnotationCreator | RnBeads.mm9 | 
| RnBeads.rn5 | RnBeadsAnnotationCreator | RnBeads.rn5 | 
| RRBSdata | Katja Hebestreit | An RRBS data set with 12 samples and 10,000 simulated DMRs | 
| rRDPData | Michael Hahsler | Database for the Default RDP Classifier | 
| RTCGA.clinical | Marcin Kosinski | Clinical datasets from The Cancer Genome Atlas Project | 
| RTCGA.mutations | Marcin Kosinski | Mutations datasets from The Cancer Genome Atlas Project | 
| RTCGA.rnaseq | Marcin Kosinski | Rna-seq datasets from The Cancer Genome Atlas Project | 
| RUVnormalizeData | Laurent Jacob | Gender data for the RUVnormalize package | 
| SCLCBam | Thomas Kuilman | Sequence data from chromosome 4 of a small-cell lung tumor | 
| seq2pathway.data | Xinan Holly Yang | data set for R package seq2pathway | 
| seqc | Yang Liao and Wei Shi | RNA-seq data generated from SEQC (MAQC-III) study | 
| seqCNA.annot | David Mosen-Ansorena | Annotation for the copy number analysis of deep sequencing cancer data with seqCNA | 
| serumStimulation | Morten Hansen, | serumStimulation is a data package which is used by examples in package pcaGoPromoter | 
| seventyGeneData | Luigi Marchionni | ExpressionSets from the van't Veer and Van de Vijver breast cancer studies | 
| shinyMethylData | Jean-Philippe Fortin | Example dataset of input data for shinyMethyl | 
| simpIntLists | Kircicegi Korkmaz | The package contains BioGRID interactions for various organisms in a simple format | 
| SNAData | Denise Scholtens | Social Networks Analysis Data Examples | 
| SNAGEEdata | David Venet | SNAGEE data | 
| SNPhoodData | Christian Arnold | Additional and more complex example data for the SNPhood package | 
| SomatiCAData | Mengjie Chen | An example cancer whole genome sequencing data for the SomatiCA package | 
| SomaticCancerAlterations | Julian Gehring | Somatic Cancer Alterations | 
| SpikeIn | Rafael A. Irizarry | Affymetrix Spike-In Experiment Data | 
| SpikeInSubset | Rafael A. Irizarry | Part of Affymetrix's Spike-In Experiment Data | 
| stemHypoxia | Cristobal Fresno | Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010) | 
| stjudem | Joern Toedling | Microarray Data from Yeoh et al. in MACAT format | 
| SVM2CRMdata | Guidantonio Malagoli Tagliazucchi | An example dataset for use with the SVM2CRM package | 
| synapterdata | Laurent Gatto | Data accompanying the synapter package | 
| systemPipeRdata | Thomas Girke | systemPipeRdata: NGS workflow templates and sample data | 
| TargetScoreData | Yue Li | TargetScoreData | 
| TargetSearchData | Alvaro Cuadros-Inostroza Henning Redestig, Matt Hannah | Example GC-MS data for TargetSearch Package | 
| TBX20BamSubset | D. Bindreither | Subset of BAM files from the "TBX20" experiment | 
| TCGAcrcmiRNA | Claudio Isella | TCGA CRC 450 miRNA dataset | 
| TCGAcrcmRNA | Claudio Isella | TCGA CRC 450 mRNA dataset | 
| TCGAMethylation450k | Sean Davis | The Cancer Genome Atlas Illumina 450k methylation example data | 
| TimerQuant | Joseph Barry | Timer Quantification | 
| tinesath1cdf | Tine Casneuf | tinesath1cdf | 
| tinesath1probe | Tine Casneuf | Probe sequence data for microarrays of type tinesath1 | 
| tweeDEseqCountData | Juan R Gonzalez | RNA-seq count data employed in the vignette of the tweeDEseq package | 
| waveTilingData | Kristof De Beuf | waveTiling Example Data | 
| WES.1KG.WUGSC | Yuchao Jiang | Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC). | 
| XhybCasneuf | Tineke Casneuf | EBI/PSB cross-hybridisation study package | 
| yeastCC | Sandrine Dudoit | Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data | 
| yeastExpData | R. Gentleman | Yeast Experimental Data | 
| yeastGSData | R. Gentleman | Yeast Gold Standard Data | 
| yeastNagalakshmi | Bioconductor Package Maintainer | Yeast genome RNA sequencing data based on Nagalakshmi et. al. | 
| yeastRNASeq | J. Bullard | Yeast RNA-Seq Experimental Data from Lee et al. 2008 | 
| yri1kgv | VJ Carey | expression + genotype on 79 unrelated YRI individuals | 
| zebrafishRNASeq | Davide Risso | Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014) | 
 
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