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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")
In most cases, you don't need to download the package archive at all.
genomeIntervals
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.
Operations on genomic intervals
Bioconductor version: 3.2
This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.
Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme
Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>
Citation (from within R,
enter citation("genomeIntervals")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genomeIntervals")
| Overview of the genomeIntervals package. | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Genetics, Infrastructure, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2) |
| Imports | GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10) |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | girafe |
| Imports Me | easyRNASeq |
| Suggests Me | RnaSeqTutorial |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | genomeIntervals_1.26.0.tar.gz |
| Windows Binary | genomeIntervals_1.26.0.zip |
| Mac OS X 10.6 (Snow Leopard) | genomeIntervals_1.26.0.tgz |
| Mac OS X 10.9 (Mavericks) | genomeIntervals_1.26.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/genomeIntervals/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/genomeIntervals/ |
| Package Downloads Report | Download Stats |
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